PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G042700.2

Common Name

B456_003G042700, LOC105787827

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ZF-HD

Protein Properties

Length: 249aa MW: 27972.1 Da PI: 7.277

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G042700.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	104.3	7.6e-33	48	102	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 k rY+eClkNhA+ +Ggha+DGCgEfmp+ g+egt +alkCaAC+CHRnFHR+e+e Gorai.003G042700.2 48 KPRYRECLKNHAVGIGGHALDGCGEFMPA-GTEGTLDALKCAACNCHRNFHRKESE 102 779***********************9.999******************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-23	50	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.2E-30	50	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	8.2E-30	50	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.576	51	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	3.4E-31	160	232	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.16E-19	161	231	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.9E-26	173	229	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MEFEDQEEQE EEMGLTPSYD SLGNSSRLKM SGVEPGSVTP TGQQQQRKPR YRECLKNHAV 60 GIGGHALDGC GEFMPAGTEG TLDALKCAAC NCHRNFHRKE SELGSPNSIH TTDLYFHHHH 120 HHQPPQFAPY FRAPTGYLHV AGQQRPLALP STSGGGGHSR EDQEDASNQG SSRKRFRTKF 180 TQEQKEKMLS LAERLGWRIQ KHDEEIVQQF CNETGVKRHV LKVWMHNNKH TLALKQSGDM 240 QCNAMQEA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-27	174	231	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469839.1	0.0	PREDICTED: zinc-finger homeodomain protein 2 isoform X1
Swissprot	Q6YXH5	2e-78	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A0D2NW20	0.0	A0A0D2NW20_GOSRA; Uncharacterized protein
STRING	Gorai.003G042700.1	1e-176	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-70	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Gorai.003G042700.2
Entrez Gene	105787827

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]