PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G043500.1
Common NameB456_003G043500, LOC105787832
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family EIL
Protein Properties Length: 505aa    MW: 57401.8 Da    PI: 4.7663
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G043500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN34102.8e-125323591353
                         XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsL 91 
                         eelkkrmwkd+ +++rlke ++++  d+       +s  ++e++rrkkmsraQD+iLkYM+k+mevc+aqGfvYgi+pekgkpv+g+sdsL
  Gorai.003G043500.1  32 EELKKRMWKDRLRMQRLKETRESSRSDH-------QSGVRQEASRRKKMSRAQDSILKYMVKIMEVCKAQGFVYGIVPEKGKPVTGSSDSL 115
                         8*****************9999865333.......445679************************************************** PP

                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHH CS
                EIN3  92 raWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwg 182
                         r+WWkekv+fd+ +p a+ +     +i+++++    ++ s  h l++lqDTtlgSLLsalmqhc ppqrrfple+g++pPWWPtG+elwwg
  Gorai.003G043500.1 116 RKWWKEKVQFDKSAPLAVDEF--LPIIVEQGEL---DPISCMHLLHDLQDTTLGSLLSALMQHCVPPQRRFPLERGLAPPWWPTGNELWWG 201
                         *****************9877..3455555544...5889*************************************************** PP

                         HHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXXXXXXXXXX CS
                EIN3 183 elglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahssslrkqspk 273
                         e+g+s++qg+ppy+kphdlkkawkvsvL+avikhmsp++++ir+l+ qsk+lqdkm+ak++ ++++v+nqee+++          +  ++ 
  Gorai.003G043500.1 202 EQGMSQEQGPPPYRKPHDLKKAWKVSVLAAVIKHMSPNLDRIRRLVTQSKCLQDKMTAKDTVTWSKVVNQEEALL----------KLTEKC 282
                         ************************************************************************976..........235677 PP

                         XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS
                EIN3 274 vtlsceqkedvegkkeskikhvqavkttagfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqne 353
                         +++s+ ++++ e+++e + ++ + ++  +++++   ++ k+  +++v  + +++ cq+  +++s  el+f  kn +s++e
  Gorai.003G043500.1 283 LKISTTKDDEEEQDSEYSLAADEGKHG-EKIAISGDKR-KYLFKRQVTPN-MMYACQNTMCPRSALELGFIGKNTRSDHE 359
                         888888888888888888665555555.4555555444.57777777777.67************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048733.7E-11732273No hitNo description
Gene3DG3DSA:1.10.3180.105.9E-69150277IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.83E-60152276IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MVEILGEIEP PSPVYEAELP EEDEEQEEIS YEELKKRMWK DRLRMQRLKE TRESSRSDHQ  60
SGVRQEASRR KKMSRAQDSI LKYMVKIMEV CKAQGFVYGI VPEKGKPVTG SSDSLRKWWK  120
EKVQFDKSAP LAVDEFLPII VEQGELDPIS CMHLLHDLQD TTLGSLLSAL MQHCVPPQRR  180
FPLERGLAPP WWPTGNELWW GEQGMSQEQG PPPYRKPHDL KKAWKVSVLA AVIKHMSPNL  240
DRIRRLVTQS KCLQDKMTAK DTVTWSKVVN QEEALLKLTE KCLKISTTKD DEEEQDSEYS  300
LAADEGKHGE KIAISGDKRK YLFKRQVTPN MMYACQNTMC PRSALELGFI GKNTRSDHES  360
SCSYRSKESD VSQESSEESE FSNRNLVPYD HHSFGPQAKL NTDSLGDAQK VIAVTDWLDM  420
ELAKANEQQR NMQSDEVGDI SGTVSQDYIN YLDGAIEDLP VPAEFLLQVG DMDLDPSLPL  480
LLENIQDQGL TSIWDMGFDG ISES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A4e-601502771128Protein ETHYLENE INSENSITIVE 3
4zds_B4e-601502771128Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469854.10.0PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX161e-140EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A0D2MJ510.0A0A0D2MJ51_GOSRA; Uncharacterized protein
STRINGGorai.003G043500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.11e-134EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]