PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G047800.2

Common Name

B456_003G047800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 182aa MW: 20211.4 Da PI: 6.7869

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G047800.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	57.2	3.3e-18	101	151	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYG+K++k+s++p s gC+vkk++er+ +d+++v++tYeg Hnhe Gorai.003G047800.2 101 DDGYKWRKYGKKSIKNSPNP-------SVGCNVKKRIERDVKDQSYVVTTYEGVHNHE 151 8*****************.......57**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-20	88	153	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-18	93	153	IPR003657	WRKY domain
PROSITE profile	PS50811	21.609	95	153	IPR003657	WRKY domain
SMART	SM00774	4.8E-21	100	152	IPR003657	WRKY domain
Pfam	PF03106	1.6E-12	101	151	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MDFSHQNPNS NPNYTFFPEN VNPMPDFEVS DYLDLDGSIF DDDTSSQSMV SSEKGMAAAT 60 ELSGATSKNS NRKCKNGVGK NKSELGVRVA FRMKSEMEVT DDGYKWRKYG KKSIKNSPNP 120 SVGCNVKKRI ERDVKDQSYV VTTYEGVHNH ETPSMVYYNQ MSIMAPNAWT FQASPPSSSS 180 T*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-16	90	154	7	78	Probable WRKY transcription factor 4
2lex_A	1e-16	90	154	7	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669806	1e-114	KF669806.1 Gossypium hirsutum WRKY transcription factor 20 (WRKY20) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469924.1	1e-131	PREDICTED: probable WRKY transcription factor 51
Swissprot	Q93WU9	4e-37	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A0D2RGS8	1e-132	A0A0D2RGS8_GOSRA; Uncharacterized protein
STRING	Gorai.003G047800.1	1e-130	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	2e-39	WRKY DNA-binding protein 51

Link Out ? help Back to Top
Phytozome	Gorai.003G047800.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]