PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G048100.1

Common Name

B456_003G048100, LOC105787881

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 216aa MW: 24817 Da PI: 8.7207

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G048100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.6	1.1e-32	138	196	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ Gorai.003G048100.1 138 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHS 196 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.4E-34	123	196	IPR003657	WRKY domain
SuperFamily	SSF118290	5.89E-29	130	197	IPR003657	WRKY domain
PROSITE profile	PS50811	29.585	133	198	IPR003657	WRKY domain
SMART	SM00774	4.0E-37	138	197	IPR003657	WRKY domain
Pfam	PF03106	1.7E-25	139	195	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MSQQAMLNQE LFEEKEMPQM GFFTFPQTLT SYPPPFGCLK AFNIAPPPAN LTETLFSHPK 60 HREEDSGSDF AGPQLLSLHS STPNLWAWGE VNECLGTKKS SGDDHLGVSA MKMKRIKGRR 120 KVREPRFCFK TMSDVDVLDD GYKWRKYGQK VVKNTQHPRS YYRCTQDNCR VKKRVERLAE 180 DPRMVITTYE GRHAHSPSQD SEDSHHPHSH LNNFF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-26	129	195	8	74	Probable WRKY transcription factor 4
2lex_A	1e-26	129	195	8	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669807	0.0	KF669807.1 Gossypium hirsutum WRKY transcription factor 21 (WRKY21) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469929.1	1e-164	PREDICTED: probable WRKY transcription factor 13
Swissprot	Q9SVB7	3e-57	WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBL	A0A0D2MJB7	1e-162	A0A0D2MJB7_GOSRA; Uncharacterized protein
STRING	Gorai.003G048100.1	1e-163	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6106	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39410.1	1e-59	WRKY DNA-binding protein 13

Link Out ? help Back to Top
Phytozome	Gorai.003G048100.1
Entrez Gene	105787881

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]