PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G049800.1

Common Name

B456_003G049800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 330aa MW: 37323.1 Da PI: 9.6556

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G049800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48.2	1.3e-15	12	55	1	44
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 k+i + r t+ kR++g++KKA+E S+LC++e +vi+++++ Gorai.003G049800.1 12 KFIMKDKVRILTYEKRKKGLIKKAQEFSILCGVETCVILYAPKS 55 57777888999*****************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	18.04	4	56	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.3E-16	4	67	IPR002100	Transcription factor, MADS-box
CDD	cd00266	8.17E-21	5	90	No hit	No description
SuperFamily	SSF55455	4.71E-19	5	98	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.8E-9	6	26	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.1E-14	14	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.8E-9	26	41	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.8E-9	41	62	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MYKMGRGKLN MKFIMKDKVR ILTYEKRKKG LIKKAQEFSI LCGVETCVIL YAPKSKETPA 60 KLEIWPPDHA KVMHVIDKYK GKPLHVRERK CFNVLDFYAI RRKKLDDEIC KLRKANTEAK 120 FSVWDDRINS FSVNQLSALL SRLDSNLESA RTMIKMIKGK HQSLIEDSTE NQLNQPSLDL 180 YNQAQLSLFQ RASDMEITKQ QQPMFTVSSS CQPFSSNEPL QWQSVNMNPI DTSMAMVSTN 240 GTLGFTQADG ECSSSTTYSS LTPQTCYDPT TSMVGNVVLS NSWGVPVCFY GQLMPPMTPF 300 ASPTMLSFPS QAGELYRNVG DRVRSINKK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	15	28	KDKVRILTYEKRKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012472601.1	0.0	PREDICTED: floral homeotic protein PISTILLATA-like
TrEMBL	A0A0D2QFT7	0.0	A0A0D2QFT7_GOSRA; Uncharacterized protein
STRING	Gorai.003G049800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24825	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	2e-26	AGAMOUS-like 82

Link Out ? help Back to Top
Phytozome	Gorai.003G049800.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]