PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G058900.1

Common Name

B456_003G058900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 140aa MW: 16549.6 Da PI: 5.4554

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G058900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	63.8	4.3e-20	9	83	22	96
DUF260 22 fpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 f ++++++f+n+hklFG+sn++k++k+ ++ e++++m+++v++++ +a+d v G++++i++l +q+e ++ael+l Gorai.003G058900.1 9 FLHDRQRQFQNAHKLFGVSNITKIIKNFNPPEKDIVMHTMVFQSDTQANDSVGGCYRIIQELPHQIEYSQAELEL 83 457999*****************************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.554	1	88	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.9E-18	9	82	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MRYRVHFPFL HDRQRQFQNA HKLFGVSNIT KIIKNFNPPE KDIVMHTMVF QSDTQANDSV 60 GGCYRIIQEL PHQIEYSQAE LELDFGCDSN LGYEMVKLDL LNLNYYYIQE PQEKQFVVDD 120 HSNNNQHLLQ ETYDHLWGI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016676738.1	2e-55	PREDICTED: LOB domain-containing protein 22-like
Refseq	XP_022715160.1	2e-55	LOB domain-containing protein 22
Swissprot	Q9LRW1	3e-30	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A0D2RHE0	1e-100	A0A0D2RHE0_GOSRA; Uncharacterized protein
STRING	Gorai.003G058900.1	1e-101	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6498	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-32	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Gorai.003G058900.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]