PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G076000.2

Common Name

B456_003G076000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 815aa MW: 89311.7 Da PI: 5.1378

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G076000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.5	0.00014	610	648	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLr ++P++ +k ls Le++++Y+ Lq Gorai.003G076000.2 610 RQLIQDRIKELRGIIPHN----GKPLSIDHLLEQTIKYLIFLQ 648 67799**********9....788************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.8E-7	10	48	IPR025610	Transcription factor MYC/MYB N-terminal
Pfam	PF14215	5.1E-14	58	150	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	9.248	597	647	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 815 aa Download sequence Send to blast
MGEAEKGSML KQTLKNLCCS NGWCYGVFWR FDQRNSMLLT MEDAYYEEQM RPLFNSILQK 60 FHILGEGIIG QAAFTGKHRW IFSDSYGKSS NSYTGNQITF QDESELQNQF SCGIKTIAII 120 SLGRQGMVQV GSTQKILERL DFLDETKKIF CGVGSFHGFT PLEIEACNQD DRFAALGSRG 180 NIYNENLATE LYGFPREPKG WPCSLKNATE SSIFMREIRD PSVNSVVQNL PHLRNQLQTS 240 NAEALSLSSG KISPVNCLAA YTPCTSTWRS EGSILTSFET SFPSESGIWD SPNMLPKAND 300 LAVSGNMEQK LQGASTFSSL YGIGELVDAE LPTLDSYGKT AEYQCSFGTN NGLLDDAINL 360 QRITEEFNPA DFTIDLCNSF NLDDLSQLFS PLPRHDINGT GATIISDVSS SVGVTSVSSA 420 LVGEKSTIVH DNGTDLFDGV GIDYAFGKTG ESLEDIIVPL LHGDNSTVTS GLSETISQLD 480 ARAMNGKRKG LFSELGLEKL LDGVNNSSHA TKSSVEDQLS ITKRRKTESS SSSFCQGQFV 540 GLSYSAGSMN PVHHSHTIFN KDIHRKSQVG AWIDDSYSVN GGQAVAATSK KPAKKRAKPG 600 ESTRPRPKDR QLIQDRIKEL RGIIPHNGKP LSIDHLLEQT IKYLIFLQGV TKYADKIKQA 660 DEPKIIGNED GMLPKHNMIS GGATWAFEVG AQSIPIVVKD LNPPGQMLIE MLCEDQGFFL 720 EIANVIRGIG LNILRAVMEL QEDKIWARFI VEAKEQVERT CIIWSLLPLL QQTGGSGIDS 780 ASQPSNDVNG GIPLSNNYLQ PFPLPPLNTA ETFQ*

Sequence ? help Back to Top

Protein Sequence Length: 815 aa Download sequence Send to blast

MGEAEKGSML KQTLKNLCCS NGWCYGVFWR FDQRNSMLLT MEDAYYEEQM RPLFNSILQK  60
FHILGEGIIG QAAFTGKHRW IFSDSYGKSS NSYTGNQITF QDESELQNQF SCGIKTIAII  120
SLGRQGMVQV GSTQKILERL DFLDETKKIF CGVGSFHGFT PLEIEACNQD DRFAALGSRG  180
NIYNENLATE LYGFPREPKG WPCSLKNATE SSIFMREIRD PSVNSVVQNL PHLRNQLQTS  240
NAEALSLSSG KISPVNCLAA YTPCTSTWRS EGSILTSFET SFPSESGIWD SPNMLPKAND  300
LAVSGNMEQK LQGASTFSSL YGIGELVDAE LPTLDSYGKT AEYQCSFGTN NGLLDDAINL  360
QRITEEFNPA DFTIDLCNSF NLDDLSQLFS PLPRHDINGT GATIISDVSS SVGVTSVSSA  420
LVGEKSTIVH DNGTDLFDGV GIDYAFGKTG ESLEDIIVPL LHGDNSTVTS GLSETISQLD  480
ARAMNGKRKG LFSELGLEKL LDGVNNSSHA TKSSVEDQLS ITKRRKTESS SSSFCQGQFV  540
GLSYSAGSMN PVHHSHTIFN KDIHRKSQVG AWIDDSYSVN GGQAVAATSK KPAKKRAKPG  600
ESTRPRPKDR QLIQDRIKEL RGIIPHNGKP LSIDHLLEQT IKYLIFLQGV TKYADKIKQA  660
DEPKIIGNED GMLPKHNMIS GGATWAFEVG AQSIPIVVKD LNPPGQMLIE MLCEDQGFFL  720
EIANVIRGIG LNILRAVMEL QEDKIWARFI VEAKEQVERT CIIWSLLPLL QQTGGSGIDS  780
ASQPSNDVNG GIPLSNNYLQ PFPLPPLNTA ETFQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012470397.1	0.0	PREDICTED: transcription factor bHLH157-like
TrEMBL	A0A0D2QGZ7	0.0	A0A0D2QGZ7_GOSRA; Uncharacterized protein
STRING	Gorai.003G076000.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	7e-48	conserved peptide upstream open reading frame 7

Link Out ? help Back to Top
Phytozome	Gorai.003G076000.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]