PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G076400.1

Common Name

B456_003G076400, LOC105788187

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 241aa MW: 26698.9 Da PI: 8.6473

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G076400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126	1.1e-39	38	98	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+ s Gorai.003G076400.1 38 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPS 98 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-27	25	90	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-33	40	96	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.134	42	96	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MDTAAQWPQE IVVKPIEEIV TNTCPKPASL ERRTRPQKEQ ALNCPRCNST NTKFCYYNNY 60 SLTQPRYFCK TCRRYWTEGG SLRNIPVGGG SRKNKRPSSS FSSPSLSSSS KNPKIHQPQD 120 LNLAFKTTTQ GYTCGNVPEL VQIPNSFSSF IPMPVPDPNT VYTSGLIPMQ DFKPILNFSL 180 DGLGSGHYGS LQGVQETTTG RFLFPFEDLK QVPNTTDTDQ NKEQGDSTGY WTGMLGGGSW 240 *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269\|PubMed:20563990}.
Uniprot	TISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269\|PubMed:20563990}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012470406.1	1e-179	PREDICTED: dof zinc finger protein DOF4.6 isoform X1
Swissprot	Q8LAP8	1e-59	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A0D2MKN3	1e-178	A0A0D2MKN3_GOSRA; Uncharacterized protein
STRING	Gorai.003G076400.1	1e-178	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3433	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-48	Dof family protein

Link Out ? help Back to Top
Phytozome	Gorai.003G076400.1
Entrez Gene	105788187

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]