PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G085500.1
Common NameB456_003G085500, LOC105788277
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 280aa    MW: 31938.7 Da    PI: 6.246
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G085500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.5e-30134191258
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                         +D ++WrKYGqK++kgs+fprsYYrC+s+ gC ++k+vers +dp+v++itY+ eH h
  Gorai.003G085500.1 134 SDVWAWRKYGQKPIKGSPFPRSYYRCSSSkGCLARKQVERSCSDPRVFIITYTAEHCH 191
                         69*************************998**************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-30119194IPR003657WRKY domain
PROSITE profilePS5081132.891128194IPR003657WRKY domain
SuperFamilySSF1182901.31E-25129194IPR003657WRKY domain
SMARTSM007743.5E-35133193IPR003657WRKY domain
PfamPF031061.5E-24135191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MENWDLQAVV GGNSSNDHLI ANPEFSFGPW SFQQDEDFMS FPEIFETNPK VLDELEQLYK  60
PFYPDLNPFS TQTIITSSIP VPLHVDEPAE KRKKKPSFTV SQSDISASPN PRRFSRKNQQ  120
NRVVEHVTAD DLPSDVWAWR KYGQKPIKGS PFPRSYYRCS SSKGCLARKQ VERSCSDPRV  180
FIITYTAEHC HGHPTRRSSL TGSTRSKPLT AAKSIEAHAE GETVKQERMK MEVELHGEQE  240
GGKILSPDLL LSNDELIRRL EDFDEGFFVD QFPHFSREM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-18121194174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 22, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00448DAPTransfer from AT4G23550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 30 minutes after flagellin treatment. {ECO:0000269|PubMed:11875555}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0310740.0KF031074.1 Gossypium hirsutum WRKY transcription factor 12 (WRKY12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470538.10.0PREDICTED: probable WRKY transcription factor 29 isoform X1
SwissprotQ9SUS16e-55WRK29_ARATH; Probable WRKY transcription factor 29
TrEMBLA0A0D2MGS70.0A0A0D2MGS7_GOSRA; Uncharacterized protein
STRINGGorai.003G085500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60902545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.13e-49WRKY family protein
Publications ? help Back to Top
  1. Zhou F, et al.
    High humidity suppresses ssi4-mediated cell death and disease resistance upstream of MAP kinase activation, H2O2 production and defense gene expression.
    Plant J., 2004. 39(6): p. 920-32
    [PMID:15341634]
  2. Liu XQ, et al.
    OsWRKY03, a rice transcriptional activator that functions in defense signaling pathway upstream of OsNPR1.
    Cell Res., 2005. 15(8): p. 593-603
    [PMID:16117849]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  4. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]
  5. Yi SY,Shirasu K,Moon JS,Lee SG,Kwon SY
    The activated SA and JA signaling pathways have an influence on flg22-triggered oxidative burst and callose deposition.
    PLoS ONE, 2014. 9(2): p. e88951
    [PMID:24586453]
  6. Cambiagno DA,Lonez C,Ruysschaert JM,Alvarez ME
    The synthetic cationic lipid diC14 activates a sector of the Arabidopsis defence network requiring endogenous signalling components.
    Mol. Plant Pathol., 2015. 16(9): p. 963-72
    [PMID:25727690]
  7. Gkizi D, et al.
    The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae.
    Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23
    [PMID:26780421]
  8. Li Y,Williams B,Dickman M
    Arabidopsis B-cell lymphoma2 (Bcl-2)-associated athanogene 7 (BAG7)-mediated heat tolerance requires translocation, sumoylation and binding to WRKY29.
    New Phytol., 2017. 214(2): p. 695-705
    [PMID:28032645]
  9. Wang S, et al.
    Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322
    [PMID:29090631]