PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G091700.1
Common NameB456_003G091700, LOC105788353
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 241aa    MW: 27828.5 Da    PI: 9.1451
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G091700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.31.2e-33251162102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+y ++ed+ ++++isw+++g+ fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF ++ F+kg+ e
  Gorai.003G091700.1  25 FLLKTYMLVEDPITNDVISWNADGSGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNEMFRKGEGE 106
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+ks
  Gorai.003G091700.1 107 LLSQIRRRKS 116
                         ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3521114IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.48E-3221114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.6E-5221114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-182548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.3E-3025114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-186375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-187688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEYMMGSDNN KVSLEYVRKS TPPPFLLKTY MLVEDPITND VISWNADGSG FVVWQPAEFA  60
RDLLPTLFKH SNFSSFVRQL NTYGFRKVAT SRWEFCNEMF RKGEGELLSQ IRRRKSWANR  120
QQNSAIAQAS SPLECEEDQR SSSTCSSSGF NNLMDENKRL RKENGALNWE LTSMKRKFKK  180
LLDLVANYAQ FEKEKDDDES PMLFGVKLEI EGDSERKRKR KRKRDEISES ASVLLSQACK  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B4e-21231163107Heat shock factor protein 2
5d8l_B4e-21231163107Heat shock factor protein 2
5d8l_D4e-21231163107Heat shock factor protein 2
5d8l_F4e-21231163107Heat shock factor protein 2
5d8l_H4e-21231163107Heat shock factor protein 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215223RKRKRKRKR
2217222RKRKRK
3217223RKRKRKR
4217224RKRKRKRD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7024470.0KJ702447.1 Gossypium hirsutum heat shock transcription factor (HSF5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470680.11e-178PREDICTED: heat stress transcription factor B-3
SwissprotO222305e-70HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A0D2QHV71e-177A0A0D2QHV7_GOSRA; Uncharacterized protein
STRINGGorai.003G091700.11e-178(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108142731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.19e-69heat shock transcription factor B3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]