PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G093300.1

Common Name

B456_003G093300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YA

Protein Properties

Length: 167aa MW: 18624.1 Da PI: 10.545

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G093300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	106.1	2.9e-33	9	65	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh hA+rR+Rg+gGrF Gorai.003G093300.1 9 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKPYLHESRHLHAMRRARGCGGRF 65 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.0E-37	7	68	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.337	8	68	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.1E-28	10	65	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.7E-24	11	33	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	13	33	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.7E-24	42	65	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MALPLEMAEE PVYVNAKQYH GILRRRQSRA KAELEKKLIK VRKPYLHESR HLHAMRRARG 60 CGGRFLNTKK LGTDASNAVP NRGSDSASSN LSSVGHGESK ESQLQGTNNQ QQALSNANGC 120 YPHHERFLFS TSGSLSDKMM EGDCPRQQQR ERIMANQVPH MALTIK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-21	9	80	2	77	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012472445.1	1e-120	PREDICTED: nuclear transcription factor Y subunit A-7-like, partial
TrEMBL	A0A0D2QQN3	1e-120	A0A0D2QQN3_GOSRA; Uncharacterized protein
STRING	Gorai.003G093300.1	1e-121	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15602	10	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.1	2e-35	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Gorai.003G093300.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]