PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G094500.2
Common NameB456_003G094500, LOC105788391
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 242aa    MW: 28561.8 Da    PI: 4.5003
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G094500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.4e-204093356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        k++++t +q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  Gorai.003G094500.2 40 KKRRLTVDQIQFLEKSFEVDNKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 93
                        55689************************************************9 PP
2HD-ZIP_I/II126.31.3e-4040130292
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         kkrrl+ +q+++LE+sFe ++kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L + y++lk++ + L ke+++L+ee+ 
  Gorai.003G094500.2  40 KKRRLTVDQIQFLEKSFEVDNKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDTLLAMYNSLKADYDDLLKEKDKLKEEVL 130
                         9**************************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.18E-193697IPR009057Homeodomain-like
SMARTSM003892.0E-203899IPR001356Homeobox domain
PfamPF000461.6E-174093IPR001356Homeobox domain
CDDcd000863.10E-174096No hitNo description
PROSITE profilePS5007116.9894095IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-2042102IPR009057Homeodomain-like
PRINTSPR000318.5E-66675IPR000047Helix-turn-helix motif
PROSITE patternPS0002707093IPR017970Homeobox, conserved site
PRINTSPR000318.5E-67591IPR000047Helix-turn-helix motif
PfamPF021832.3E-1395137IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MVSFEDSLKT NRPKRSIFKM FDEQENGYDE YLEECFHQPK KRRLTVDQIQ FLEKSFEVDN  60
KLEPERKIQL AKDLGLQPRQ VAIWFQNRRA RWKTKQLEKD YDTLLAMYNS LKADYDDLLK  120
EKDKLKEEVL QLTDKLQTKE NERRNSEFSD VKPLLLQEPS QKPIVVSMAA CKQEDIDSDN  180
IPQYYSDEFH SSLLEAADSS YPFEPDQSDL SQDEEDSLHP PASLSNFGFP VEDHPFWSWT  240
Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18795RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470727.11e-176PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBLA0A0D2QI001e-175A0A0D2QI00_GOSRA; Uncharacterized protein
TrEMBLA0A0D2RJM11e-175A0A0D2RJM1_GOSRA; Uncharacterized protein
STRINGGorai.003G094500.11e-176(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-44homeobox 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]