PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G099700.1
Common NameB456_010G021900, LOC105774454
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 196aa    MW: 22166.3 Da    PI: 10.5217
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G099700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-1780129255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Gorai.003G099700.1  80 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDIAVFYLRG 129
                         69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.20780137IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-2180138IPR016177DNA-binding domain
SMARTSM003804.3E-3680143IPR001471AP2/ERF domain
PfamPF008471.9E-1081129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-2981138IPR001471AP2/ERF domain
PRINTSPR003671.2E-118192IPR001471AP2/ERF domain
CDDcd000181.20E-2681139No hitNo description
PRINTSPR003671.2E-11119139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSAKFVFKYI RSTWRPCPDD KLAAKWETIL QFISPPTLCL WFWFFGRVPA MEGDCCSSST  60
SSSTSGEKPK AERTQQKEKP YRGIRMRKWG KWVAEIREPN KRSRIWLGSY TTPVAAARAY  120
DIAVFYLRGP SARLNFPDLI EKDNKLRDIS ATSIRKKAAE VGAKVDALQT SSVYHHGGSS  180
SDSPNNTRRV FFSAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1577137263ATERF1
3gcc_A4e-1577137263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5893125e-56JX589312.1 Gossypium hirsutum clone NBRI_GE23985 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472457.11e-144PREDICTED: ethylene-responsive transcription factor RAP2-9-like
SwissprotO221742e-45ERF08_ARATH; Ethylene-responsive transcription factor ERF008
SwissprotQ9FH943e-45ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A0D2R0P21e-139A0A0D2R0P2_GOSRA; Uncharacterized protein
STRINGGorai.003G099700.11e-143(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.12e-47DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]