PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G104600.1
Common NameB456_003G104600, LOC105788501
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 351aa    MW: 39064.7 Da    PI: 4.9753
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G104600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.61.7e-051758438
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg........Ht 38
                        ++C+ ++    +l+C++++ +lC+ C  ++H g        H+
  Gorai.003G104600.1 17 HTCDSCQAAACTLYCHTDSAYLCHGCDKHIH-GdntmalshHR 58
                        58******99*********************.54777777554 PP
2zf-B_box24.65.1e-0858104242
            zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42 
                         + ++C+ +e  ++   C  +   lC +C  + H +       Ht+vp+
  Gorai.003G104600.1  58 RVWICDACEAAPAAVTCSADAASLCIECDIQVH-SvnplasrHTRVPI 104
                         5789*****************************.55899999**9997 PP
3CCT38.93.2e-14307335129
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKav 29 
                         Re+++lRY+eKrk+RkFeKkirY+sRKa+
  Gorai.003G104600.1 307 REEKVLRYREKRKSRKFEKKIRYASRKAC 335
                         9**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.51855IPR000315B-box-type zinc finger
CDDcd000217.08E-71961No hitNo description
PROSITE profilePS501199.1861961IPR000315B-box-type zinc finger
PROSITE profilePS5011910.13957104IPR000315B-box-type zinc finger
SMARTSM003368.9E-1357104IPR000315B-box-type zinc finger
PfamPF006431.3E-659104IPR000315B-box-type zinc finger
CDDcd000214.80E-860104No hitNo description
PROSITE profilePS5101710.497307349IPR010402CCT domain
PfamPF062032.9E-9307337IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MLKVSSGEDG YLNNWIHTCD SCQAAACTLY CHTDSAYLCH GCDKHIHGDN TMALSHHRVW  60
ICDACEAAPA AVTCSADAAS LCIECDIQVH SVNPLASRHT RVPIPPISGQ ICSSSSVQQD  120
GQLPGTMFDT KNEIAALTME VNLEINEDEM DSWLLLEPGN TDNQTMSGFT YGEQLDEYVD  180
VVDTCTESFG PEQSSDQQQL VCVNCPEDSG SDSVVPVQTL RTKNQPLQEE TQLQKQQLHS  240
TYFNSEQSGS KTAFTNYPSS SLRVPMLMIT PAGIPNSYTG FPATTTTTEI LPNPWLLMPL  300
QFTSMNREEK VLRYREKRKS RKFEKKIRYA SRKACRDSTS YQRQICKENR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2017110.0KM201711.1 Gossypium raimondii CONSTANS-like 2 protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470882.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2-like isoform X2
TrEMBLA0A0D2QIF40.0A0A0D2QIF4_GOSRA; Uncharacterized protein
STRINGGorai.003G104600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1921777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.15e-50CONSTANS-like 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]