PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G105500.1

Common Name

B456_003G105500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 245aa MW: 28239.7 Da PI: 9.738

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G105500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48	1.6e-15	11	52	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+s r+ t+ kR +g++KK +ELS LC+++++ i++s+ Gorai.003G105500.1 11 ITNDSLRKATYKKRNKGLMKKMSELSNLCGINACAIMYSPYE 52 89*************************************854 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	14.886	1	49	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.9E-18	1	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-6	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.32E-20	3	94	IPR002100	Transcription factor, MADS-box
CDD	cd00266	7.77E-27	3	85	No hit	No description
Pfam	PF00319	6.1E-15	11	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-6	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MIRKKVQLAY ITNDSLRKAT YKKRNKGLMK KMSELSNLCG INACAIMYSP YESQLEVWPS 60 PIEGQQVLSK SRMILEMEQR KNMVNQESFL SQSIVKVVEQ LKKHCKDNQE KEMTLVMFNN 120 ICGKWVIHGF NFRDINDLNE KISNIDKRMD AFAMTPLYTQ RASSSSSSSM VALPLMTMVM 180 PKAMSRTDTK DIVQSDVNNM DPMKRQQWIM DLMNKNNNNN PQTHVGGDWM RFQFGDDIHP 240 NNGH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX620215	1e-91	JX620215.1 Gossypium hirsutum clone NBRI_GE66400 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016733978.1	1e-114	PREDICTED: agamous-like MADS-box protein AGL80
TrEMBL	A0A0D2NZB7	0.0	A0A0D2NZB7_GOSRA; Uncharacterized protein
STRING	Gorai.003G105500.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	1e-40	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Gorai.003G105500.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]