PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G112200.1
Common NameB456_003G112200, LOC105788584
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 231aa    MW: 25630.1 Da    PI: 7.707
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G112200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-2078128255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp     k +r++lg+f+ta eAaka+++a+ kl+g
  Gorai.003G112200.1  78 HYRGVRRRP-WGKFAAEIRDP---HrKGARVWLGTFDTAIEAAKAYDEAAFKLRG 128
                         7********.**********6...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-3277137IPR001471AP2/ERF domain
SMARTSM003804.1E-3778142IPR001471AP2/ERF domain
PROSITE profilePS5103224.578136IPR001471AP2/ERF domain
CDDcd000181.61E-3178136No hitNo description
PfamPF008471.7E-1478128IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-2378137IPR016177DNA-binding domain
PRINTSPR003671.3E-137990IPR001471AP2/ERF domain
PRINTSPR003671.3E-13118138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MPSSEETLAL ELIPEHLLTD FASMDSFLAS LHHIVEAPQF SQIHSPNQMK QSTLSQRRPS  60
INVAIPAPKV NVSDEQRHYR GVRRRPWGKF AAEIRDPHRK GARVWLGTFD TAIEAAKAYD  120
EAAFKLRGSK AILNFPLEAG KSSSAHSELT KACIKRKREE EEEEGRVESK VVKREKEENA  180
VKETGSVTPG VCLTPSNWTG FWDSEDMKGI FSIPPLSPLS PFGYSGLAVM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2977137464ATERF1
3gcc_A5e-2977137464ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.8940.0seedling
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487441990.0
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5273351e-117HQ527335.1 Gossypium herbaceum clone NBRI_B_EYI1BW404JRQ87 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470988.11e-171PREDICTED: ethylene-responsive transcription factor ERF105-like
SwissprotQ8VY902e-70EF105_ARATH; Ethylene-responsive transcription factor ERF105
TrEMBLA0A0D2MMH61e-169A0A0D2MMH6_GOSRA; Uncharacterized protein
STRINGGorai.003G112200.11e-170(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78932641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]
  4. Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
    ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
    Plant Cell Environ., 2017. 40(1): p. 108-120
    [PMID:27723941]
  5. König K,Vaseghi MJ,Dreyer A,Dietz KJ
    The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves.
    Physiol Plant, 2018. 162(3): p. 262-273
    [PMID:28984358]