PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G112700.1
Common NameB456_003G112700, LOC105788591
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 286aa    MW: 32227.7 Da    PI: 6.4104
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G112700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34e-141257146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46
                        +g+WT eEde+l ++vk++G++ W++I r mg + Rt+k+c++rw +
  Gorai.003G112700.1 12 KGPWTGEEDEILMNYVKKYGPKGWSSI-RSMGlLPRTGKSCRLRWVN 57
                        79************************9.6777788**********87 PP
2Myb_DNA-binding45.41.9e-1468107344
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                         ++++eE+   +++ +++G++ W++Iar+++ gRt++++k++w
  Gorai.003G112700.1  68 KFSAEEERVVIELQAEFGNK-WAKIARHLP-GRTDNDVKNFW 107
                         79******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.312759IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-21860IPR009057Homeodomain-like
SuperFamilySSF466892.34E-2910107IPR009057Homeodomain-like
SMARTSM007174.8E-121161IPR001005SANT/Myb domain
PfamPF002495.5E-121257IPR001005SANT/Myb domain
CDDcd001671.00E-111459No hitNo description
PROSITE profilePS5129421.28860115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-1861113IPR009057Homeodomain-like
SMARTSM007171.4E-1265113IPR001005SANT/Myb domain
CDDcd001671.40E-1168107No hitNo description
PfamPF002491.2E-1268107IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MERQSDGTFI KKGPWTGEED EILMNYVKKY GPKGWSSIRS MGLLPRTGKS CRLRWVNKLR  60
PNLKTGCKFS AEEERVVIEL QAEFGNKWAK IARHLPGRTD NDVKNFWSAR RKRLERISHT  120
PKSKGKDHHA LHEMPMVEVV PSNGVPLEQG SSSHQHPFFP GNLEEFKLVP LPDLIKPDFL  180
NMETGLSTLD IEPIRMIPQL QVDLPILPDS FDFNFAAMFN NQEASESESK PISLTKIPSA  240
GIKGSDAELG KKENIGNSAT PDSFFDEFPT DMFDCLEPLV SSSEW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-271011325126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470997.10.0PREDICTED: transcription factor MYB23-like
RefseqXP_016740141.10.0PREDICTED: transcription factor MYB23-like
TrEMBLA0A0D2RKK90.0A0A0D2RKK9_GOSRA; Uncharacterized protein
TrEMBLA0A1U8NM930.0A0A1U8NM93_GOSHI; transcription factor MYB23-like
STRINGGorai.003G112700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2229145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.13e-64MYB family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]