PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G130400.1
Common NameB456_003G130400, LOC105788808
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 640aa    MW: 72398.4 Da    PI: 6.5205
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G130400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS388.95.6e-1192666353374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         +lL++cA+av+ +d++ a++lL+++s+++s +gd +qR a yf+ AL +rla+++   y+ l +++ts    ++ l+a+++++ ++P+ k+
  Gorai.003G130400.1 266 SLLTQCAQAVAINDQRTANELLKQISQNSSTTGDGTQRFANYFADALTTRLAGMGAPSYSPLVSNRTS---AADILKAYRVLVLACPFKKM 353
                         79*********************************************************999988888...9******************* PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                          h+ aN+ I++ +e+++++Hi+Df+i +G+QWp+L+q L++R++gpp+lRiTg++ p++g   +e++eetg+rL++++e+++vpfe+nv +
  Gorai.003G130400.1 354 MHFYANKKIMKVAEKATTLHIVDFGICYGFQWPCLIQRLSARAGGPPKLRITGIEFPQPGfrPAERVEETGRRLKRYCERFKVPFEYNV-I 443
                         ***********************************************************9****************************9.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                         ak++e+++leeL++k++E+++Vn++++l++l+d+++s++s+rd vLkl++s++P+ +++  ++  +n++ F++rf eal ++sa+fd +ea
  Gorai.003G130400.1 444 AKKWETIQLEELKIKKDEVVIVNCMYRLKNLPDDTLSSTSARDIVLKLIRSINPEFFIHGISNGTYNAPFFVTRFREALFHFSAIFDIFEA 534
                         ******************************************************************************************* PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                         ++pr++ +r++ Ere+lgr+i+nvvaceg er+er et+++W++r  +aGFk++pl+++ +k++  +++  + + + ++ +  ++++gWk+
  Gorai.003G130400.1 535 NVPRDDPQRMMFEREILGRDIMNVVACEGIERVERPETYKQWQARTLRAGFKQIPLDQELVKKVTNMVQSNYHRDFIIDVDGRWMLQGWKG 625
                         ************************************************************************999**************** PP

                GRAS 365 rpLvsvSaWr 374
                         r ++++S+W+
  Gorai.003G130400.1 626 RVIFALSCWK 635
                         *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.524238615IPR005202Transcription factor GRAS
PfamPF035141.9E-116266635IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MDTTLFQDFP SSMYGFKLDH GAVPVYSIHD FVSNNNGFIK DSPPQVVPSP DSPVESGTTT  60
NSEAHPLDSI PFANEMLKYI NEMLMEEDME EKTCMLQDCL ALQAAEKSFY EVLGHEYPLS  120
TDPIPAYTDQ NGGSPGDFNS SLIQTSLVDT LERTSLFPDL QRGIPPSIEP SGSSLLGSKG  180
RKNYERGDVD DLEQGRSNKQ FAVSLEDSEQ TDMFDDVLLC KGENEDDPRC SLNKSSQHVW  240
PQKGTSKGGT ARRKNGKKSE VVDLWSLLTQ CAQAVAINDQ RTANELLKQI SQNSSTTGDG  300
TQRFANYFAD ALTTRLAGMG APSYSPLVSN RTSAADILKA YRVLVLACPF KKMMHFYANK  360
KIMKVAEKAT TLHIVDFGIC YGFQWPCLIQ RLSARAGGPP KLRITGIEFP QPGFRPAERV  420
EETGRRLKRY CERFKVPFEY NVIAKKWETI QLEELKIKKD EVVIVNCMYR LKNLPDDTLS  480
STSARDIVLK LIRSINPEFF IHGISNGTYN APFFVTRFRE ALFHFSAIFD IFEANVPRDD  540
PQRMMFEREI LGRDIMNVVA CEGIERVERP ETYKQWQART LRAGFKQIPL DQELVKKVTN  600
MVQSNYHRDF IIDVDGRWML QGWKGRVIFA LSCWKPMKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-532686358375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012471310.10.0PREDICTED: scarecrow-like protein 30
SwissprotP0C8830.0SCL33_ARATH; Scarecrow-like protein 33
TrEMBLA0A0D2MN900.0A0A0D2MN90_GOSRA; Uncharacterized protein
STRINGGorai.003G130400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.10.0GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]