PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G130400.2

Common Name

B456_003G130400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 613aa MW: 69340 Da PI: 7.0193

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G130400.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	389.1	5e-119	239	608	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 +lL++cA+av+ +d++ a++lL+++s+++s +gd +qR a yf+ AL +rla+++ y+ l +++ts ++ l+a+++++ ++P+ k+ Gorai.003G130400.2 239 SLLTQCAQAVAINDQRTANELLKQISQNSSTTGDGTQRFANYFADALTTRLAGMGAPSYSPLVSNRTS---AADILKAYRVLVLACPFKKM 326 79*******************************************************999988888...9*************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182 h+ aN+ I++ +e+++++Hi+Df+i +G+QWp+L+q L++R++gpp+lRiTg++ p++g +e++eetg+rL++++e+++vpfe+nv + Gorai.003G130400.2 327 MHFYANKKIMKVAEKATTLHIVDFGICYGFQWPCLIQRLSARAGGPPKLRITGIEFPQPGfrPAERVEETGRRLKRYCERFKVPFEYNV-I 416 *******************************************************9************************9.7 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 ak++e+++leeL++k++E+++Vn++++l++l+d+++s++s+rd vLkl++s++P+ +++ ++ +n++ F++rf eal ++sa+fd +ea Gorai.003G130400.2 417 AKKWETIQLEELKIKKDEVVIVNCMYRLKNLPDDTLSSTSARDIVLKLIRSINPEFFIHGISNGTYNAPFFVTRFREALFHFSAIFDIFEA 507 *************************************************************************************** PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364 ++pr++ +r++ Ere+lgr+i+nvvaceg er+er et+++W++r +aGFk++pl+++ +k++ +++ + + + ++ + ++++gWk+ Gorai.003G130400.2 508 NVPRDDPQRMMFEREILGRDIMNVVACEGIERVERPETYKQWQARTLRAGFKQIPLDQELVKKVTNMVQSNYHRDFIIDVDGRWMLQGWKG 598 ********************************************************************999************ PP GRAS 365 rpLvsvSaWr 374 r ++++S+W+ Gorai.003G130400.2 599 RVIFALSCWK 608 *******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.524	211	588	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-116	239	608	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence Send to blast
MDTTLFQDFP SSMYGFKLDH GAVPVYSIHD FVSNNNGFIK DSPPQVVPSP DSPVESGTTT 60 NSEAHPLDSI PFANEMLKYI NEMLMEEDME EKTCMLQDCL ALQAAEKSFY EVLGHEYPLS 120 TDPIPAYTDQ NGGSPGDFNS SLIQTSLVDT LERTSLFPDL QRGIPPSIEP SGSSLLGSKG 180 RKNYERGDVD DLEQGENEDD PRCSLNKSSQ HVWPQKGTSK GGTARRKNGK KSEVVDLWSL 240 LTQCAQAVAI NDQRTANELL KQISQNSSTT GDGTQRFANY FADALTTRLA GMGAPSYSPL 300 VSNRTSAADI LKAYRVLVLA CPFKKMMHFY ANKKIMKVAE KATTLHIVDF GICYGFQWPC 360 LIQRLSARAG GPPKLRITGI EFPQPGFRPA ERVEETGRRL KRYCERFKVP FEYNVIAKKW 420 ETIQLEELKI KKDEVVIVNC MYRLKNLPDD TLSSTSARDI VLKLIRSINP EFFIHGISNG 480 TYNAPFFVTR FREALFHFSA IFDIFEANVP RDDPQRMMFE REILGRDIMN VVACEGIERV 540 ERPETYKQWQ ARTLRAGFKQ IPLDQELVKK VTNMVQSNYH RDFIIDVDGR WMLQGWKGRV 600 IFALSCWKPM KN*

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence Send to blast

MDTTLFQDFP SSMYGFKLDH GAVPVYSIHD FVSNNNGFIK DSPPQVVPSP DSPVESGTTT  60
NSEAHPLDSI PFANEMLKYI NEMLMEEDME EKTCMLQDCL ALQAAEKSFY EVLGHEYPLS  120
TDPIPAYTDQ NGGSPGDFNS SLIQTSLVDT LERTSLFPDL QRGIPPSIEP SGSSLLGSKG  180
RKNYERGDVD DLEQGENEDD PRCSLNKSSQ HVWPQKGTSK GGTARRKNGK KSEVVDLWSL  240
LTQCAQAVAI NDQRTANELL KQISQNSSTT GDGTQRFANY FADALTTRLA GMGAPSYSPL  300
VSNRTSAADI LKAYRVLVLA CPFKKMMHFY ANKKIMKVAE KATTLHIVDF GICYGFQWPC  360
LIQRLSARAG GPPKLRITGI EFPQPGFRPA ERVEETGRRL KRYCERFKVP FEYNVIAKKW  420
ETIQLEELKI KKDEVVIVNC MYRLKNLPDD TLSSTSARDI VLKLIRSINP EFFIHGISNG  480
TYNAPFFVTR FREALFHFSA IFDIFEANVP RDDPQRMMFE REILGRDIMN VVACEGIERV  540
ERPETYKQWQ ARTLRAGFKQ IPLDQELVKK VTNMVQSNYH RDFIIDVDGR WMLQGWKGRV  600
IFALSCWKPM KN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-53	241	608	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012471310.1	0.0	PREDICTED: scarecrow-like protein 30
TrEMBL	A0A0D2QSU6	0.0	A0A0D2QSU6_GOSRA; Uncharacterized protein
STRING	Gorai.003G130400.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46600.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	Gorai.003G130400.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]