PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G130700.1
Common NameB456_003G130700, LOC105788813
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 718aa    MW: 79748.1 Da    PI: 9.9447
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G130700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07597646147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Gorai.003G130700.1 597 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 646
                         6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.72E-6400490IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.733592651IPR017930Myb domain
SMARTSM007172.0E-7596649IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-10597647IPR009057Homeodomain-like
CDDcd116604.95E-17598648No hitNo description
SuperFamilySSF466891.35E-15598679IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MELQKRLDYG FNGYQVPATP RATRSARKRV PFKKRVEDKR ISAFDLLATV AGKLLLDKES  60
TPVSSNTSSA EDKSKVEKNT VKEERRDGNQ SSKLETCDQY SNDREFIISQ LVSQTNDLRS  120
CSFRKSPSLK NDTHFGLTSV VTTSDCSERS GVLKLMNGKI KNEMGSLPCK VETGPFLCGA  180
SGGRIKLEFE NKGPIHEELD RTDKLSFREV ADTCPLEDPV VVDGKPPLLV SSDSSGKTHS  240
YGFNNHLGSF PGKRDDLKIV SRDDDEKSSG CTYLGPIKKP FRPTPLIGDR RIRKTMTSKY  300
LKVAPRLNDV TLSNSDENLK SAYCDRSAYK RIRSERNYPF KKRKFLHYSS VSNSDGGISS  360
EGISDSPEQS INGNASGVYP KMRGVTGESP SLADQRKSFH SRDSHVKFRI KSFRVPELFI  420
EIPESATIGS LKRTVMEAVT AILGGGLRIG VLLQGKKVRD DNKTLLQTGI SRDNQMDALG  480
FSLEPNPSQT FPSHCPGGSP LKFPCDTPLP LARYPATPGL VTRVTHDPSH EPHMHNLGNF  540
VESDHDSAPS PTDMSLDKST TDSKALVAVP AMSVEALDVV PAHRKSKRSE VVQRRIRRPF  600
SVAEVEALVQ AVEKLGTGRW RDVKLRAFDN AKHRTYVDLK DKWKTLVHTA RISPQQRRGE  660
PVPQELLDRV LTAHAYWSQQ QAKQQLKQQQ QPESCLLLYN STVRASSRSD GGEKNFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-575816871107Telomere binding protein TBP1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012471314.10.0PREDICTED: telomere repeat-binding protein 5
RefseqXP_012471315.10.0PREDICTED: telomere repeat-binding protein 5
SwissprotQ6R0E31e-144TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A0D2RLX40.0A0A0D2RLX4_GOSRA; Uncharacterized protein
STRINGGorai.003G130700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-116TRF-like 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]