PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G130700.2
Common NameB456_003G130700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 708aa    MW: 78491.7 Da    PI: 9.5642
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G130700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07587636147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Gorai.003G130700.2 587 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 636
                         6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.57E-6390480IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.733582641IPR017930Myb domain
SMARTSM007172.0E-7586639IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-10587637IPR009057Homeodomain-like
SuperFamilySSF466891.35E-15588669IPR009057Homeodomain-like
CDDcd116603.71E-17588638No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MDSMAIRCLL LHEQPDQPGV PFKKRVEDKR ISAFDLLATV AGKLLLDKES TPVSSNTSSA  60
EDKSKVEKNT VKEERRDGNQ SSKLETCDQY SNDREFIISQ LVSQTNDLRS CSFRKSPSLK  120
NDTHFGLTSV VTTSDCSERS GVLKLMNGKI KNEMGSLPCK VETGPFLCGA SGGRIKLEFE  180
NKGPIHEELD RTDKLSFREV ADTCPLEDPV VVDGKPPLLV SSDSSGKTHS YGFNNHLGSF  240
PGKRDDLKIV SRDDDEKSSG CTYLGPIKKP FRPTPLIGDR RIRKTMTSKY LKVAPRLNDV  300
TLSNSDENLK SAYCDRSAYK RIRSERNYPF KKRKFLHYSS VSNSDGGISS EGISDSPEQS  360
INGNASGVYP KMRGVTGESP SLADQRKSFH SRDSHVKFRI KSFRVPELFI EIPESATIGS  420
LKRTVMEAVT AILGGGLRIG VLLQGKKVRD DNKTLLQTGI SRDNQMDALG FSLEPNPSQT  480
FPSHCPGGSP LKFPCDTPLP LARYPATPGL VTRVTHDPSH EPHMHNLGNF VESDHDSAPS  540
PTDMSLDKST TDSKALVAVP AMSVEALDVV PAHRKSKRSE VVQRRIRRPF SVAEVEALVQ  600
AVEKLGTGRW RDVKLRAFDN AKHRTYVDLK DKWKTLVHTA RISPQQRRGE PVPQELLDRV  660
LTAHAYWSQQ QAKQQLKQQQ QPESCLLLYN STVRASSRSD GGEKNFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-575716771107Telomere binding protein TBP1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012471314.10.0PREDICTED: telomere repeat-binding protein 5
RefseqXP_012471315.10.0PREDICTED: telomere repeat-binding protein 5
SwissprotQ6R0E31e-145TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A0D2QK330.0A0A0D2QK33_GOSRA; Uncharacterized protein
STRINGGorai.003G130700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-116TRF-like 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]