PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G130700.3

Common Name

B456_003G130700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 697aa MW: 77424.7 Da PI: 9.9501

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G130700.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.2	1.6e-07	576	625	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ Gorai.003G130700.3 576 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 625 6789999*****************9988889************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54236	3.1E-5	385	469	IPR029071	Ubiquitin-related domain
PROSITE profile	PS51294	14.733	571	630	IPR017930	Myb domain
SMART	SM00717	2.0E-7	575	628	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-10	576	626	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.35E-15	577	658	IPR009057	Homeodomain-like
CDD	cd11660	4.91E-17	577	627	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence Send to blast
MELQKRLDYG FNGYQVPATP RATRSARKRV PFKKRVEDKR ISAFDLLATV AGKLLLDKES 60 TPVSSNTSSA EDKSKVEKNT VKEERRDGNQ SSKLETCDQY SNDREFIISQ LVSQTNDLRS 120 CSFRKSPSLK NDTHFGLTSV VTTSDCSERS GVLKLMNGKI KNEMGSLPCK VETGPFLCGA 180 SGGRIKLEFE NKGPIHEELD RTDKLSFREV ADTCPLEDPV VVDGKPPLLV SSDSSGKTHS 240 YGFNNHLGSF PGKRDDLKIV SRDDDEKSSG CTYLGPIKKP FRPTPLIGDR RIRKTMTSKY 300 LKVAPRLNDV TLSNSDENLK SAYCDRSAYK RIRSERNYPF KKRKFLHYSS VSNSDGGISS 360 EGISDSPEQS INGNASGVYP KMRGVKFRIK SFRVPELFIE IPESATIGSL KRTVMEAVTA 420 ILGGGLRIGV LLQGKKVRDD NKTLLQTGIS RDNQMDALGF SLEPNPSQTF PSHCPGGSPL 480 KFPCDTPLPL ARYPATPGLV TRVTHDPSHE PHMHNLGNFV ESDHDSAPSP TDMSLDKSTT 540 DSKALVAVPA MSVEALDVVP AHRKSKRSEV VQRRIRRPFS VAEVEALVQA VEKLGTGRWR 600 DVKLRAFDNA KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP VPQELLDRVL TAHAYWSQQQ 660 AKQQLKQQQQ PESCLLLYNS TVRASSRSDG GEKNFG*

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence Send to blast

MELQKRLDYG FNGYQVPATP RATRSARKRV PFKKRVEDKR ISAFDLLATV AGKLLLDKES  60
TPVSSNTSSA EDKSKVEKNT VKEERRDGNQ SSKLETCDQY SNDREFIISQ LVSQTNDLRS  120
CSFRKSPSLK NDTHFGLTSV VTTSDCSERS GVLKLMNGKI KNEMGSLPCK VETGPFLCGA  180
SGGRIKLEFE NKGPIHEELD RTDKLSFREV ADTCPLEDPV VVDGKPPLLV SSDSSGKTHS  240
YGFNNHLGSF PGKRDDLKIV SRDDDEKSSG CTYLGPIKKP FRPTPLIGDR RIRKTMTSKY  300
LKVAPRLNDV TLSNSDENLK SAYCDRSAYK RIRSERNYPF KKRKFLHYSS VSNSDGGISS  360
EGISDSPEQS INGNASGVYP KMRGVKFRIK SFRVPELFIE IPESATIGSL KRTVMEAVTA  420
ILGGGLRIGV LLQGKKVRDD NKTLLQTGIS RDNQMDALGF SLEPNPSQTF PSHCPGGSPL  480
KFPCDTPLPL ARYPATPGLV TRVTHDPSHE PHMHNLGNFV ESDHDSAPSP TDMSLDKSTT  540
DSKALVAVPA MSVEALDVVP AHRKSKRSEV VQRRIRRPFS VAEVEALVQA VEKLGTGRWR  600
DVKLRAFDNA KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP VPQELLDRVL TAHAYWSQQQ  660
AKQQLKQQQQ PESCLLLYNS TVRASSRSDG GEKNFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2juh_A	2e-57	560	666	1	107	Telomere binding protein TBP1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.1661	2e-82	flower\| flowering

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269\|PubMed:15364931}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012471314.1	0.0	PREDICTED: telomere repeat-binding protein 5
Refseq	XP_012471315.1	0.0	PREDICTED: telomere repeat-binding protein 5
Swissprot	Q6R0E3	1e-144	TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBL	A0A0D2MN92	0.0	A0A0D2MN92_GOSRA; Uncharacterized protein
STRING	Gorai.003G130700.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-114	TRF-like 2

Link Out ? help Back to Top
Phytozome	Gorai.003G130700.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]