PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G151800.1
Common NameB456_003G151800, LOC105789056
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 224aa    MW: 24052.3 Da    PI: 8.7306
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G151800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.58.2e-42401391100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+k+l ++pe++r da++slvyeA+ r+rdPvyG++g i +lqqq+++l+
  Gorai.003G151800.1  40 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGAIVTLQQQMQNLQ 130
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         ael+++++e
  Gorai.003G151800.1 131 AELNAIRAE 139
                         ****99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.8539140IPR004883Lateral organ boundaries, LOB
PfamPF031955.8E-4240137IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSRDRERLDE IGKKIKTDAV GEMGRRHLLG PPGTLNTITP CAACKLLRRR CAEECPFSPY  60
FSPHEPHKFA AVHKVFGASN VSKMLMEVPE SQRADAANSL VYEANLRLRD PVYGCMGAIV  120
TLQQQMQNLQ AELNAIRAEI LKYKIREVTN SNILPSTHPH THTHATLVSG GAVSVAASSS  180
PLPPPPSIVV STSSSSSASS LYTSATSATG YSSISSDNVP FFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-44321483119LOB family transfactor Ramosa2.1
5ly0_B4e-44321483119LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012471717.11e-165PREDICTED: LOB domain-containing protein 15
SwissprotQ8L5T52e-81LBD15_ARATH; LOB domain-containing protein 15
TrEMBLA0A0D2RN131e-164A0A0D2RN13_GOSRA; Uncharacterized protein
STRINGGorai.003G151800.11e-164(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19272781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.18e-82LOB domain-containing protein 15
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ohashi-Ito K,Iwamoto K,Fukuda H
    LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    Plant Cell Physiol., 2018. 59(5): p. 989-996
    [PMID:29444288]