PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G156000.1
Common NameB456_003G156000, LOC105789101
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 590aa    MW: 66091.5 Da    PI: 6.9458
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G156000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.4e-093704071954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Gorai.003G156000.1 370 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 407
                         554459******************************88 PP
2BELL1123.4e-36232302272
                BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         ++elqk+k+kLls+lee+d+rYk+y++q+++v+ sFeavag+g+a +Y +lA+ka+SrhFr+L+d i++qi
  Gorai.003G156000.1 232 FMELQKRKTKLLSMLEELDRRYKHYCDQMKAVVLSFEAVAGIGAASVYSALASKAMSRHFRSLRDGIVGQI 302
                         689******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.7E-60167300IPR006563POX domain
PfamPF075262.5E-46173298IPR006563POX domain
PROSITE profilePS5007112.179348411IPR001356Homeobox domain
CDDcd000861.47E-11351412No hitNo description
SMARTSM003895.8E-9351415IPR001356Homeobox domain
SuperFamilySSF466894.71E-17352417IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27354417IPR009057Homeodomain-like
PfamPF059207.7E-18368407IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MDDKSTGFCY STMPTHLVNQ IQSFESNPEM FNLTTGMEMI GFFNKNGSNT TTTGTPSCSK  60
AVNESTTEFY QHAEFTTGLE VGTESSGPWQ DDSSFRCVFP CEGNERPSQG LSLSLSSSNP  120
TTIGVQSFEL KQVGHGYDNQ HDDMRFIGSS SSSREGFFAK PANHHHHQGE FQLRNSKYLG  180
PTQELLNEFC SLAMKQMDSS KQKQSIHKGN KQWDDENGGS SSMKQPLHSL DFMELQKRKT  240
KLLSMLEELD RRYKHYCDQM KAVVLSFEAV AGIGAASVYS ALASKAMSRH FRSLRDGIVG  300
QIQATRKAMG EKDPVAPGTT KGETPRLRIL DQALRQQRSY HQMNMMESHP WRPQRGLPER  360
SVSVLRAWLF EHFLHPYPSD VDKHILARQT GLSRSQVSNW FINARVRLWK PMVEEMYLEE  420
TKEHENNNMA SPNGATNTNQ NDQKPTPDQL VRVDSECLSS IVTNLDKNDP KSAKTIETRH  480
SLHHHHHHHQ QQSFATYGAM ELDFSSYNHH QAAASNGGGV SLTLGLQQHG GNNGVSLAFS  540
PTSQSSLFYP RSDQIEDCQP VQYSLLDGEG QHLPYRSLMG AQLLHDLAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-15357415563Homeobox protein Meis2
4xrm_B2e-15357415563Homeobox protein Meis2
4xrs_A2e-15357414158Homeobox protein Meis1
4xrs_B2e-15357414158Homeobox protein Meis1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}.
UniprotTISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5272131e-145HQ527213.1 Gossypium herbaceum clone NBRI_C_3534 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012471784.10.0PREDICTED: homeobox protein BEL1 homolog
SwissprotQ388971e-154BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A0D2QLF90.0A0A0D2QLF9_GOSRA; Uncharacterized protein
STRINGGorai.003G156000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58662639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-154TALE family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]