PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G163800.1
Common NameB456_003G163800, LOC105789167
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 300aa    MW: 33596.8 Da    PI: 6.2915
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G163800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.8e-082482812154
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         k +yp+++++++L +++gL+ +q+ +WF N+R +
  Gorai.003G163800.1 248 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 281
                         469*****************************87 PP
2ELK24.27.8e-09202223122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK +L++++++++ ++++E++
  Gorai.003G163800.1 202 ELKIELKQGFKSKIEDVREEIL 223
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.2E-183579IPR005540KNOX1
PfamPF037901.3E-173778IPR005540KNOX1
SMARTSM012563.0E-2491146IPR005541KNOX2
PfamPF037911.6E-1794145IPR005541KNOX2
PROSITE profilePS512139.045202222IPR005539ELK domain
PROSITE profilePS5007111.677222285IPR001356Homeobox domain
SuperFamilySSF466894.02E-16224289IPR009057Homeodomain-like
SMARTSM003891.4E-10224289IPR001356Homeobox domain
CDDcd000862.65E-11225286No hitNo description
Gene3DG3DSA:1.10.10.607.0E-25229287IPR009057Homeodomain-like
PfamPF059201.0E-17242281IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MQEPGGLGMM SSGGGSETIG GLSSGEVSVS GDQNRHLKAE IATHPLYEQL LAAHVSCLRV  60
ATPIDQLSLI DAQLAESHNI LRSYASQQQG HSLSPHERQE LDNFLAQYLI VLCTFKEQLQ  120
QHVRVHAVEA VMACREIENN LQALTGVTLG EGTGATMSDD EDELQMDFSL DQSGSDGHDL  180
MGFGPLLPTE SERSLMERVR QELKIELKQG FKSKIEDVRE EILRKRRAGK LPGDTTTVLK  240
NWWQQHSKWP YPTEDDKAKL VEETGLQLKQ INNWFINQRK RNWHSNSQSV TSLKSKRKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12225281864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278298RKRNWHSNSQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012471884.10.0PREDICTED: homeobox protein HD1-like
SwissprotQ9FPQ81e-172KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A0D2QLU60.0A0A0D2QLU6_GOSRA; Uncharacterized protein
STRINGGorai.003G163800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-169KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]