PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G175300.1
Common NameB456_003G175300, LOC105789282
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 331aa    MW: 36370.2 Da    PI: 7.0453
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G175300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.1e-1194138347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+  ++ + ++lG+g+W+ I+r     Rt+ q+ s+ qky
  Gorai.003G175300.1  94 PWTEEEHRMFLLGLQKLGKGDWRGISRNYVISRTPTQVASHAQKY 138
                         7*****************************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.106.7E-4321IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.17887143IPR017930Myb domain
SuperFamilySSF466898.97E-1789144IPR009057Homeodomain-like
TIGRFAMsTIGR015578.1E-1990142IPR006447Myb domain, plants
SMARTSM007174.0E-991141IPR001005SANT/Myb domain
PfamPF002494.6E-1094138IPR001005SANT/Myb domain
CDDcd001676.86E-994139No hitNo description
Gene3DG3DSA:1.10.10.601.6E-1094137IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MTRRCSHCSH NGHNSRTCPN RGFKLFGVRL TDGLIRKSAS MGNLSQYSGL NSGMHNRNGS  60
GEPGDGPDHA DGYASEDFVP GSSSSNRERK RGIPWTEEEH RMFLLGLQKL GKGDWRGISR  120
NYVISRTPTQ VASHAQKYFI RQSNVSRRKR RSSLFDIVTD ESSDIPMVSH DSFSENPSEA  180
EAQSNDHLPI PPALDEEDET MDTDKSNDGE NIHIPPKPET SQPPYPALYP AYFPPFFPFS  240
LSYWMGYNTE PTKENTHEVV KPMAVHSKIP INVDELVGMS KLSLGESIGG NGPSSVSLKL  300
DGSSRQSAFH ANPVPGNSRM NSSGSPIHAN *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in all tissues, with the highest level in senescent leaves. {ECO:0000269|PubMed:12172034}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472056.10.0PREDICTED: transcription factor MYB1R1-like
SwissprotQ7XC571e-126MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A0D2MQB40.0A0A0D2MQB4_GOSRA; Uncharacterized protein
STRINGGorai.003G175300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34262759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-116MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]
  4. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]