PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G185700.5
Common NameB456_003G185700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 314aa    MW: 33519.7 Da    PI: 6.8098
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G185700.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.42.8e-22213275163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L++e++++k e+++l +e+
  Gorai.003G185700.5 213 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKEENASLRSEANRIKSEYEQLLAEN 275
                         89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165965.1E-4946180No hitNo description
Gene3DG3DSA:1.20.5.1701.9E-16206271No hitNo description
SMARTSM003382.6E-21213277IPR004827Basic-leucine zipper domain
PfamPF001701.2E-20213275IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.047215278IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.31E-10216272No hitNo description
CDDcd147021.22E-21218268No hitNo description
PROSITE patternPS000360220235IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MTWFNLGQGS YPFSPFAMPS PNGIVEASGN TPGNMEADGK PSDVKEKLPI KRSKGSLGSL  60
NMITGKNNNL GKESGASANG AYSRSAESGS EGTSEGSEEN SHNDSHLKSG GRQDSGEGEA  120
SQNGNSAHGP QNGGANTMVS TALPIVPIST AVATTAVPGP TTNLHIGMDY WGSPASSTIP  180
AMRGKVPPTP VAGGIVTPAS RDSVQSQIWL QDERELKRQR RKQSNRESAR RSRLRKQAEC  240
DELAQRAEVL KEENASLRSE ANRIKSEYEQ LLAENTSLKE RLKEIPGHED LNSSRNDQHT  300
NNDKQIEQVQ GSQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229235RRSRLRK
2229236RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472217.10.0PREDICTED: transcription factor HBP-1a isoform X1
RefseqXP_012472218.10.0PREDICTED: transcription factor HBP-1a isoform X1
RefseqXP_012472219.10.0PREDICTED: transcription factor HBP-1a isoform X2
SwissprotQ501B21e-117BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A0D2QVI20.0A0A0D2QVI2_GOSRA; Uncharacterized protein
STRINGGorai.003G185700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-103basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]