PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G012800.1

Common Name

B456_004G012800, LOC105790049

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 204aa MW: 22006.1 Da PI: 5.2145

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G012800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.5	4.7e-43	37	136	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++C+lapyfp ++p+kf n+h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+ Gorai.004G012800.1 37 PCAACKILRRRCADKCMLAPYFPPTEPAKFTNAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNELQ 127 7**************************************************************************************** PP DUF260 92 aelallkee 100 a+la++++e Gorai.004G012800.1 128 AQLAKAQAE 136 **99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.209	36	137	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-43	37	134	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MFKMECREAT PSAVASPNSS NPSSPSTPTS PPVVISPCAA CKILRRRCAD KCMLAPYFPP 60 TEPAKFTNAH RVFGASNIIK FLQELPESQR ADAVSSMVYE ASARIRDPVY GCAGAICQLQ 120 KQVNELQAQL AKAQAEVVNM QLQQANLVGA LLCMEATAPP PQPHPQQLAV DTFMCSPQSY 180 HSNPGFIDDD DDNNNLGSLW EPL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-43	23	139	1	113	LOB family transfactor Ramosa2.1
5ly0_B	3e-43	23	139	1	113	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012472898.1	1e-149	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9SK08	2e-73	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A0D2MRZ9	1e-148	A0A0D2MRZ9_GOSRA; Uncharacterized protein
STRING	Gorai.004G012800.1	1e-149	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	2e-61	LOB domain-containing protein 11

Link Out ? help Back to Top
Phytozome	Gorai.004G012800.1
Entrez Gene	105790049

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]