PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G029000.1
Common NameB456_004G029000, LOC105790210
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 257aa    MW: 29267 Da    PI: 9.4645
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G029000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.6e-191764148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEd++l+d+++++G g W+t ++  g++R++k+c++rw +yl
  Gorai.004G029000.1 17 RGPWTAEEDKKLIDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYL 64
                        89********************************************97 PP
2Myb_DNA-binding538.1e-1770113146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++ eE++ +++++  lG++ W++Ia++++ gRt++++k++w++
  Gorai.004G029000.1  70 RGKFSDEEEQTIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNT 113
                         89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1881264IPR017930Myb domain
SuperFamilySSF466892.59E-3115111IPR009057Homeodomain-like
SMARTSM007176.4E-151666IPR001005SANT/Myb domain
PfamPF002495.7E-171764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-251871IPR009057Homeodomain-like
CDDcd001675.03E-121964No hitNo description
PROSITE profilePS5129426.35965119IPR017930Myb domain
SMARTSM007171.5E-1569117IPR001005SANT/Myb domain
PfamPF002499.6E-1670113IPR001005SANT/Myb domain
CDDcd001672.40E-1172113No hitNo description
Gene3DG3DSA:1.10.10.606.6E-2772119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGKQPACSSD KKGEVKRGPW TAEEDKKLID YIQKHGHGKW RTLPKNAGLK RCGKSCRLRW  60
ANYLRPDIKR GKFSDEEEQT IIQLHSVLGN KWSAIAARLP GRTDNEIKNY WNTRIKKKLL  120
KMGIDPILHN PTLHLLHLSS LLTSSLSNSY NLNNHPNKFL LGTESMSDPN FLIPVLSSSQ  180
NKNQLQNIEK NQTENTFFQC PHNNQYEQGN QFQEYDSKGF FPMQSYGYYD CNLSMDDQNQ  240
TCFSGNISSL SSFGSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-31171197108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves and flowers. {ECO:0000269|PubMed:8980549}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473143.10.0PREDICTED: transcription repressor MYB6-like
RefseqXP_012473144.10.0PREDICTED: transcription repressor MYB6-like
SwissprotQ9LDR86e-82MY102_ARATH; Transcription factor MYB102
TrEMBLA0A0D2P5Z40.0A0A0D2P5Z4_GOSRA; Uncharacterized protein
STRINGGorai.004G029000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3606422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-73MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  5. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]