PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G033200.1
Common NameB456_004G033200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 557aa    MW: 60660.4 Da    PI: 6.7661
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G033200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.4e-32213270260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  er++ d++++ei+Y+g+H+h+k
  Gorai.004G033200.1 213 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERAH-DGQIMEIIYKGTHDHPK 270
                         8***************************************9.***************85 PP
2WRKY106.41.5e-33372430159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Gorai.004G033200.1 372 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHN 430
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.905207271IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-26209271IPR003657WRKY domain
SuperFamilySSF1182909.02E-25210271IPR003657WRKY domain
SMARTSM007743.7E-33212270IPR003657WRKY domain
PfamPF031061.6E-24213269IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-37357432IPR003657WRKY domain
SuperFamilySSF1182902.09E-29364432IPR003657WRKY domain
PROSITE profilePS5081138.434367432IPR003657WRKY domain
SMARTSM007744.0E-39372431IPR003657WRKY domain
PfamPF031064.0E-26373429IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MEEQILAPSS SLPTQHVLSG SAGSGGARYK LVAPSKLPIS RSACLTTPPG LSPSSFLESP  60
VLLSDVKVEP SPTTGSLFKP QPVHAWVASS TYPESVACSN AFDERNTSCF EFKTHPISNM  120
ASADLNHQRS EQSLHIQGQN GTVLFDSSAS VKSEMAGLSN ELSLSVPVHT ATSMVSVPPE  180
VDVEELSQMG NPNIGIQSGQ SDHRVGGQSV SFDDGYNWRK YGQKHVKGSE FPRSYYKCTH  240
PNCEVKKLFE RAHDGQIMEI IYKGTHDHPK PQPSCRYSSS NIVSGQKERS DKLSSLNGRD  300
SIYGQTVHSV EPNSTADLLP VTANDDNVDD VDDDDPLSKR RKMDGAIDII PVVRPIREPR  360
VVVQTLSEVD ILDDGYRWRK YGQKVVRGNP NPRSYYKCTN AGCPVRKHVE RASHDPKAVI  420
TTYEGKHNHN VPTARTNSHD TTGPIPVNGP SRIRSEDNGA ISLDLGVGIS SISENSSNEH  480
QQLHSELVQC HPQTGGSSFK FVQPHPMAAY YSVLNSSDMN QYGSRENPNQ GPGVEITPLN  540
HSYAFPQSIG RILMGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-36212432877Probable WRKY transcription factor 4
2lex_A5e-36212432877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697630.0KF669763.1 Gossypium hirsutum WRKY transcription factor 22 (WRKY22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473197.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0D2P6600.0A0A0D2P660_GOSRA; Uncharacterized protein
STRINGGorai.004G033200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-170WRKY family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]