PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G033200.2
Common NameB456_004G033200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 521aa    MW: 56724.1 Da    PI: 6.4679
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G033200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.41.4e-28213264254
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYeg 54 
                         dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  er++ d++++ei+Y++
  Gorai.004G033200.2 213 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERAH-DGQIMEIIYKD 264
                         8***************************************9.*********97 PP
2WRKY106.51.3e-33336394159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Gorai.004G033200.2 336 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHN 394
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.566207272IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.9E-23209264IPR003657WRKY domain
SuperFamilySSF1182904.32E-21210263IPR003657WRKY domain
SMARTSM007742.5E-25212274IPR003657WRKY domain
PfamPF031062.9E-21213263IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-37321396IPR003657WRKY domain
SuperFamilySSF1182901.96E-29328396IPR003657WRKY domain
PROSITE profilePS5081138.434331396IPR003657WRKY domain
SMARTSM007744.0E-39336395IPR003657WRKY domain
PfamPF031063.6E-26337393IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MEEQILAPSS SLPTQHVLSG SAGSGGARYK LVAPSKLPIS RSACLTTPPG LSPSSFLESP  60
VLLSDVKVEP SPTTGSLFKP QPVHAWVASS TYPESVACSN AFDERNTSCF EFKTHPISNM  120
ASADLNHQRS EQSLHIQGQN GTVLFDSSAS VKSEMAGLSN ELSLSVPVHT ATSMVSVPPE  180
VDVEELSQMG NPNIGIQSGQ SDHRVGGQSV SFDDGYNWRK YGQKHVKGSE FPRSYYKCTH  240
PNCEVKKLFE RAHDGQIMEI IYKDSIYGQT VHSVEPNSTA DLLPVTANDD NVDDVDDDDP  300
LSKRRKMDGA IDIIPVVRPI REPRVVVQTL SEVDILDDGY RWRKYGQKVV RGNPNPRSYY  360
KCTNAGCPVR KHVERASHDP KAVITTYEGK HNHNVPTART NSHDTTGPIP VNGPSRIRSE  420
DNGAISLDLG VGISSISENS SNEHQQLHSE LVQCHPQTGG SSFKFVQPHP MAAYYSVLNS  480
SDMNQYGSRE NPNQGPGVEI TPLNHSYAFP QSIGRILMGP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36212396877Probable WRKY transcription factor 4
2lex_A3e-36212396877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697630.0KF669763.1 Gossypium hirsutum WRKY transcription factor 22 (WRKY22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017624241.10.0PREDICTED: probable WRKY transcription factor 20 isoform X2
SwissprotQ93WV01e-176WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0D2MSY70.0A0A0D2MSY7_GOSRA; Uncharacterized protein
STRINGGorai.004G033200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.25e-76WRKY family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]