PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G034600.3
Common NameB456_004G034600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 566aa    MW: 61742.6 Da    PI: 6.9404
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G034600.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.35.5e-32147204260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k
  Gorai.004G034600.3 147 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPTCQVKKKVERSH-EGHITEIIYKGAHNHPK 204
                         7****************************************.***************85 PP
2WRKY104.27.2e-33359417159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  Gorai.004G034600.3 359 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 417
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.101141205IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-28142205IPR003657WRKY domain
SuperFamilySSF1182905.75E-25144205IPR003657WRKY domain
SMARTSM007743.7E-35146204IPR003657WRKY domain
PfamPF031062.2E-24147203IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-37344419IPR003657WRKY domain
SuperFamilySSF1182901.15E-28351419IPR003657WRKY domain
PROSITE profilePS5081138.664354419IPR003657WRKY domain
SMARTSM007741.5E-37359418IPR003657WRKY domain
PfamPF031064.7E-25360417IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MLMIGAVSQS LVIKVRITIL KTSMHHHLPS SPLQNRIPLF SLVTPASLPQ QSFSNVEVSV  60
QSENSQPSRS VDPRKLQQQN SNMLSLQADF LRSSTEKDTG SNNSADQRVF DPVGGSVEHS  120
LPLDEPQDEE GDQRVSGDCM AGGAPSEDGY NWRKYGQKQV KGSEYPRSYY KCTHPTCQVK  180
KKVERSHEGH ITEIIYKGAH NHPKPPPNRR SSIGSSNPLI DVQLELPEQT GLQNGTDGEP  240
VWATAQKAMV AATHDWTHEN IEMTSSATIC PENGTAPAPN GTHIESGDAV DASSTFSNDE  300
DEDDRGTHGS VSLGYDGEGD ESESKRRKIE AYTTEMSGAT RAIREPRVVV QTTSEVDILD  360
DGYRWRKYGQ KVVKGNPNPR SYYKCTSAGC TVRKHVERAS HDLKSVITTY EGKHNHDVPA  420
ARNSSHVNSA TSNTATALAS SSVQTHAHRP EPSQLHNSMV RPTSFGPFTL PGRQQLGPSP  480
GFSFGMNQPG LANLAMAGLG PGQPKMPVLP LHPYMPHQRQ GNEMGFRLPK GEAKMEPMSD  540
PGLDLSNNTS VYQQLMSRLP LGPQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-37147420878Probable WRKY transcription factor 4
2lex_A8e-37147420878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697640.0KF669764.1 Gossypium hirsutum WRKY transcription factor 24 (WRKY24) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314100.10.0probable WRKY transcription factor 2
RefseqXP_012473219.10.0PREDICTED: probable WRKY transcription factor 2
RefseqXP_012473220.10.0PREDICTED: probable WRKY transcription factor 2
SwissprotQ9FG771e-148WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A0D2QR640.0A0A0D2QR64_GOSRA; Uncharacterized protein
STRINGGorai.004G034600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-148WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  5. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]