PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G034900.1
Common NameB456_004G034900, LOC105790268
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 438aa    MW: 50169.6 Da    PI: 6.8784
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G034900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS404.11.4e-123414371374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaal....... 81 
                         +++lL++cAe vs++d+ +a +lL+ ls  +sp+gd+++R++  f++AL+ r++r + ++  + l+ s+  ++    s  ++++       
  Gorai.004G034900.1  41 MRQLLISCAELVSQSDFPAAIRLLSILSSSSSPSGDSIERIVYQFVRALSLRINRlHHHHHHHGLAGSSLMRMMndISFPITSTagpvnyd 131
                         589****************************************************544455555544333322223444444448888899 PP

                GRAS  82 .........klfsevsPilkfshltaNqaIleave.geervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeel 158
                                    +++++P+++f+hltaNqaIlea++ g++++HiiDfdi+qG+QWp+L+qaLa+R+    ++pp+lRiTg g+    + + l
  Gorai.004G034900.1 132 idpslqscyLSLNQITPFIRFAHLTANQAILEAIQvGQQCIHIIDFDIMQGVQWPPLMQALAERSanthHPPPMLRITGTGH----DLNIL 218
                         99988775344***********************94669**************************88877899*********....9**** PP

                GRAS 159 eetgerLakfAeelgvpfefnvl...vak.rledlel.eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveq 244
                         ++tg+rL kfA++lg++fef++l    ++ ++ + ++ ++  + p+EalaVn++l l+rll+++       + +L+ +k l+P+vv+v+e+
  Gorai.004G034900.1 219 HRTGDRLFKFAQSLGLRFEFHPLlvlNEDpTWIATNFtSMVTILPDEALAVNCMLYLQRLLKDDSRDI---RLFLHHMKALNPTVVTVAER 306
                         **********************96532223454555415668889****************6665555...59****************** PP

                GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                         ea+hn++ Fl+rf+eal+yy+a+fdslea+lp++s+er  vE+ ++greiv++va+eg++rrerhe+le+W+  l+++GF +vpls +a +
  Gorai.004G034900.1 307 EANHNHPLFLQRFVEALDYYTAIFDSLEATLPPNSRERLAVEQIWFGREIVDIVAAEGENRRERHERLETWEVILRSSGFINVPLSPFAHS 397
                         ******************************************************************************************* PP

                GRAS 336 qaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         qaklllr ++ s+gy+++  +++++lgW++rpL+svS+Wr
  Gorai.004G034900.1 398 QAKLLLRLHYpSEGYQLQIVNNCFFLGWQNRPLFSVSSWR 437
                         ***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.86315416IPR005202Transcription factor GRAS
PfamPF035144.7E-12141437IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MLSLLISPFI DQEEEEGLFL FVASDLHHQH RQQRRQPPLK MRQLLISCAE LVSQSDFPAA  60
IRLLSILSSS SSPSGDSIER IVYQFVRALS LRINRLHHHH HHHGLAGSSL MRMMNDISFP  120
ITSTAGPVNY DIDPSLQSCY LSLNQITPFI RFAHLTANQA ILEAIQVGQQ CIHIIDFDIM  180
QGVQWPPLMQ ALAERSANTH HPPPMLRITG TGHDLNILHR TGDRLFKFAQ SLGLRFEFHP  240
LLVLNEDPTW IATNFTSMVT ILPDEALAVN CMLYLQRLLK DDSRDIRLFL HHMKALNPTV  300
VTVAEREANH NHPLFLQRFV EALDYYTAIF DSLEATLPPN SRERLAVEQI WFGREIVDIV  360
AAEGENRRER HERLETWEVI LRSSGFINVP LSPFAHSQAK LLLRLHYPSE GYQLQIVNNC  420
FFLGWQNRPL FSVSSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-65434376375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the axils of leaf primordia and leaves from P1 to P20/22. In the axil of P1, expressed in 3 to 5 cell layers including the L1 to L3 layers of the shoot apical meristem (SAM). Then, extends from 1 or 2 cell layers in the adaxial-abaxial dimension. From P5 to P22, expression is restricted to a 1 to 2 cell-layer domain located within primordium. In the axils of older leaf primordia, expression decreases until it is no longer detectable in the axils of primordia older than P20/P22. {ECO:0000269|PubMed:12730136}.
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2361140.0KP236114.1 Gossypium hirsutum LAS-like transcription factor (LAS) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473228.10.0PREDICTED: scarecrow-like protein 18
SwissprotQ9ZWC51e-138SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A0D2P6800.0A0A0D2P680_GOSRA; Uncharacterized protein
STRINGGorai.004G034900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113292733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-135GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]