PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G035800.4
Common NameB456_004G035800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 263aa    MW: 29687.5 Da    PI: 10.4305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G035800.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.2e-12202247655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+ l P+     +k  + a++L +AveYIk+Lq
  Gorai.004G035800.4 202 SIAERMRRTRISERMRKLQGLFPNI----DKQTNTADMLDMAVEYIKDLQ 247
                         689*********************5....588*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.018196246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-15199258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.07E-10200251No hitNo description
Gene3DG3DSA:4.10.280.106.1E-14201257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-9202247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-10202252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MLRVHLVLVQ IWDWRIQCKE MGMVQILLGK PVLHLRFSLA MALIMGMVFY QCKFLGFNAT  60
RKMTTLRACN GINGEPTSTG RLYNHISFSS GPMPQIAQVE NGGLASNGNG RNGMNFIPNL  120
MSDSRNNASL SGLKRARERD SDLLSGLSRL QTRNQDCRDC STALTHQLSL PTTYEEVDVW  180
QFQSSVPCKI RAKRGCATHP RSIAERMRRT RISERMRKLQ GLFPNIDKQT NTADMLDMAV  240
EYIKDLQKQV KILRDTKAKC SC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5792851e-131JX579285.1 Gossypium hirsutum clone NBRI_GE11491 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473239.11e-153PREDICTED: transcription factor bHLH130-like
SwissprotQ66GR35e-45BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A0D2QR850.0A0A0D2QR85_GOSRA; Uncharacterized protein
STRINGGorai.004G035800.11e-152(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-34bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]