PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G053200.1
Common NameB456_004G053200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 378aa    MW: 40934 Da    PI: 8.5923
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G053200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.31.6e-105275427
                        ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                          C +++rtG+C yG++C+++H++
  Gorai.004G053200.1 52 TDCVYYMRTGFCGYGNSCRYNHPR 75
                        68********************96 PP
2zf-CCCH41.52.2e-1394120127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C+f+++tGtCk+G++CkF+H++
  Gorai.004G053200.1  94 PGEPVCQFYLKTGTCKFGASCKFHHPK 120
                         5789*********************96 PP
3zf-CCCH375.6e-12141166227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+++++tG+Ck+G +CkF+H++
  Gorai.004G053200.1 141 GEKECSYYLKTGQCKFGITCKFHHPQ 166
                         7899********************97 PP
4zf-CCCH36.96.2e-12298324127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++++rtG Ck+G++C+++H++
  Gorai.004G053200.1 298 PGEPECQYYLRTGDCKFGSSCRYHHPR 324
                         5799*********************96 PP
5zf-CCCH34.92.6e-11345369226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +  +C f++++G+Ck+G++CkF H+
  Gorai.004G053200.1 345 GVQPCAFYLQNGHCKFGSTCKFDHP 369
                         6789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.8E-64875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1694876IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-65076IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-75275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-45475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.61593121IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-893120IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-1195120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-697121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-698119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821139167IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5139166IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6141167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4145165IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-6297324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817297325IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9299324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6301326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4303324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.084343371IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-6343370IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-9345369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6345374IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5347369IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MELYGRNPTR NGSQSGYQPE WSPAGPETGL EESRWQLSVR GVESYPERLG VTDCVYYMRT  60
GFCGYGNSCR YNHPRNRAAV EAAVRATGEY PERPGEPVCQ FYLKTGTCKF GASCKFHHPK  120
DGGGSFSHVS LNMHGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQPSGT SMSASAPQFY  180
QPVQSPSVPV PEQYGGASTN VRVARPPPLP GSYVQGGAYG PVLFSPGVVP IPGWSHYLAP  240
VSPVLSPGAQ PAVGATSLYG LTHLSSSTPS LAGPYSSLPS STGLSSSNQK EHTFPERPGE  300
PECQYYLRTG DCKFGSSCRY HHPRDRVVPQ TNCVLSPMGL PLRPGVQPCA FYLQNGHCKF  360
GSTCKFDHPV GTMRFSP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021280725.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0D2RTX50.0A0A0D2RTX5_GOSRA; Uncharacterized protein
TrEMBLA0A2P5RYS50.0A0A2P5RYS5_GOSBA; Uncharacterized protein
STRINGGorai.004G053200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-179C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]