PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G070500.1

Common Name

B456_004G070500, LOC105793545

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 229aa MW: 25501.5 Da PI: 5.166

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G070500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.1	5.1e-19	100	150	3	56
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g ++AeIrdp+ ng +r++lg++ t+e+Aa a+++a+ +++g+ Gorai.004G070500.1 100 YRGVRRRP-WGTYAAEIRDPKRNG--ARIWLGTYETPEGAALAYDRAAFNMRGA 150 9*****.******98776..***********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	5.1E-13	99	149	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	8.1E-31	99	158	IPR001471	AP2/ERF domain
CDD	cd00018	4.02E-30	99	159	No hit	No description
PROSITE profile	PS51032	23.209	99	157	IPR001471	AP2/ERF domain
SMART	SM00380	3.6E-34	99	163	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.5E-12	100	111	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.09E-21	100	158	IPR016177	DNA-binding domain
PRINTS	PR00367	2.5E-12	139	159	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MYCDSASNFD LSLLDSIRQY LLEDDFDTIP GQVVENLPKS ELHDDAINVD QWINFDQLFE 60 AAEEKVAVNN VSFPSLEVTS EMETTAAVPK PQAPPKKVNY RGVRRRPWGT YAAEIRDPKR 120 NGARIWLGTY ETPEGAALAY DRAAFNMRGA KAKLNFPHLI GSNQVEPVRV SSNKRRSPEP 180 SSSCSSAQSP SSPSSTLTSE DVTPKSKRRS VMNCFSKTEF EVDMYQLI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-28	96	164	2	70	ATERF1
3gcc_A	2e-28	96	164	2	70	ATERF1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX586436	2e-77	JX586436.1 Gossypium hirsutum clone NBRI_GE20263 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012477897.1	1e-170	PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBL	A0A0D2R0F7	1e-169	A0A0D2R0F7_GOSRA; Uncharacterized protein
STRING	Gorai.004G070500.1	1e-170	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	4e-41	ethylene-responsive element binding factor 13

Link Out ? help Back to Top
Phytozome	Gorai.004G070500.1
Entrez Gene	105793545

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]