PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G070600.1

Common Name

B456_004G070600, LOC105790620

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 231aa MW: 26266.4 Da PI: 5.0193

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G070600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.1	2.2e-18	100	150	3	56
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g ++AeIrdp+ ng +r++lg++ t+e+Aa a+++ + k++g+ Gorai.004G070600.1 100 YRGVRRRP-WGTYAAEIRDPKRNG--ARIWLGTYETPEGAALAYDRTAFKMRGA 150 9*****.******98776..************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	3.3E-33	99	163	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.958	99	157	IPR001471	AP2/ERF domain
CDD	cd00018	4.26E-29	99	159	No hit	No description
Gene3D	G3DSA:3.30.730.10	4.3E-30	99	158	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.66E-21	100	158	IPR016177	DNA-binding domain
Pfam	PF00847	2.3E-12	100	149	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.1E-12	100	111	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.1E-12	139	159	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MYCDSASDFD LSLLDSIRQY LLEDDFDTIP GQVVENLRKN ELHDDAINVD QWINFDQLFD 60 AAEETDAVNN ASFPSFEVSF QMESTAAVPK PHAPPKMFNY RGVRRRPWGT YAAEIRDPKR 120 NGARIWLGTY ETPEGAALAY DRTAFKMRGA KAKLNFPHLI GSDQVEPVRV SSKKRRSAEP 180 PSSCSWAQWP SSPWDDGTPK SKRRRSEIKT ESEVDMYQLM PTEFCQTLIC *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	4e-27	99	164	5	70	ATERF1
3gcc_A	4e-27	99	164	5	70	ATERF1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX586436	2e-65	JX586436.1 Gossypium hirsutum clone NBRI_GE20263 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012473780.1	1e-173	PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBL	A0A0D2MUS8	1e-172	A0A0D2MUS8_GOSRA; Uncharacterized protein
STRING	Gorai.004G070600.1	1e-173	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	1e-41	ethylene-responsive element binding factor 13

Link Out ? help Back to Top
Phytozome	Gorai.004G070600.1
Entrez Gene	105790620

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]