PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G070700.1
Common NameB456_004G070700, LOC105790623
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 244aa    MW: 27767.2 Da    PI: 7.1848
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G070700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-18101152256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         +y+GVr+++ +g ++AeIrdp+ n  ++r++lg++ t+e Aa a+++a+ k++g+
  Gorai.004G070700.1 101 HYRGVRRRP-WGTYAAEIRDPKRN--SARIWLGTYETPESAALAYDRAAFKFRGA 152
                         6********.**********9655..5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.828101159IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22101160IPR016177DNA-binding domain
PfamPF008477.0E-13101151IPR001471AP2/ERF domain
CDDcd000183.18E-29101161No hitNo description
Gene3DG3DSA:3.30.730.101.2E-30101160IPR001471AP2/ERF domain
SMARTSM003801.0E-33101165IPR001471AP2/ERF domain
PRINTSPR003671.8E-12102113IPR001471AP2/ERF domain
PRINTSPR003671.8E-12141161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MYYDSVSEFD LRLLESIRRY LLEDDFDTNP GQVVENVDKN GLHVHDDAIK VDQWIIFDQS  60
FDAAEKRVGV NNASFPSFEV IFQKETGAAV PKPHALPKEV HYRGVRRRPW GTYAAEIRDP  120
KRNSARIWLG TYETPESAAL AYDRAAFKFR GAKAKLNFPH LIGSNQVEPA RVNSNKRKSP  180
VPSSTSSSVQ LPSSPLFTLT SDDETPKSKR KRSEIKFSSI ETEFEGDMHQ LMMQTEFFQT  240
LIY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2898166270ATERF1
3gcc_A6e-2898166270ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473781.10.0PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLA0A0D2P8461e-180A0A0D2P846_GOSRA; Uncharacterized protein
STRINGGorai.004G070700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-31ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]