PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G075100.5

Common Name

B456_004G075100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CAMTA

Protein Properties

Length: 188aa MW: 21760.8 Da PI: 8.6259

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G075100.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	132.2	1.8e-41	2	86	34	118
CG-1 34 pksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 pksg+++L++rk++r+frkDGy+w +kkdgkt++E+he+LKvg e +++yYah+e+n+tf rrcywlL+++le++vlvhy+e+k Gorai.004G075100.5 2 PKSGTIVLFDRKMLRNFRKDGYNWENKKDGKTIKEAHEHLKVGDKERIHVYYAHGEDNSTFVRRCYWLLDKSLEQMVLVHYRETK 86 9*********************************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01076	7.7E-37	1	86	IPR005559	CG-1 DNA-binding domain
PROSITE profile	PS51437	56.732	1	91	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.0E-36	2	84	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MPKSGTIVLF DRKMLRNFRK DGYNWENKKD GKTIKEAHEH LKVGDKERIH VYYAHGEDNS 60 TFVRRCYWLL DKSLEQMVLV HYRETKEVGV YYKQKTLRYH SRIKQSFMFL PTQNQFVNDV 120 CGFVLQTIAE PGESVNVRNH EMKLLEINTL EWDELLVANG ANDSIASRGG IVLVSSISSN 180 TYLVAEL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, sepals, petals, stamen filaments, top of carpels, anthers and siliques, but not in stigmas. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:12218065, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012473836.1	1e-101	PREDICTED: calmodulin-binding transcription activator 5-like isoform X3
Swissprot	Q9LSP8	1e-51	CMTA6_ARATH; Calmodulin-binding transcription activator 6
TrEMBL	A0A0D2MV03	1e-138	A0A0D2MV03_GOSRA; Uncharacterized protein
STRING	Gorai.004G075100.1	1e-135	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16940.1	7e-56	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Gorai.004G075100.5

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]