PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G075200.3
Common NameB456_004G075200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 233aa    MW: 24221.5 Da    PI: 9.1189
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G075200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.27.9e-10153197554
                         HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         h+++Er RR+ri +++  L+el+P+ +      K + a +L + v+Y+k L
  Gorai.004G075200.3 153 HSIAERLRRERITERIRALQELVPSvN------KTDRAVMLDEIVDYVKFL 197
                         99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-15146207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.069148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-15150207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-7153197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-11154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MANNTNEAPA ADDFLEQILG LPNFAPSETG LAGSDAGLAA TAPGAGAPMF LQLSSGDGAA  60
HIGGIGGGGG GAFHGQVFPL GLSLEQGQGG FLKPEEASGS GKRFRNGVVD DRASSVKNVF  120
HGQPMQATVS AAPHPPTMRP RVRARRGQAT DPHSIAERLR RERITERIRA LQELVPSVNK  180
TDRAVMLDEI VDYVKFLRLQ VKVLSMSRLG GAGAVAPLVT DIPLSSVEVI NK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162RLRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473830.11e-163PREDICTED: transcription factor UNE12-like
SwissprotO227682e-87UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0D2QTG81e-165A0A0D2QTG8_GOSRA; Uncharacterized protein
STRINGGorai.004G075200.11e-162(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.23e-76bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]