PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G097700.1

Common Name

B456_004G097700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 155aa MW: 17894 Da PI: 4.5021

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G097700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.6	8.3e-11	107	149	4	46
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k+++r +NR A rsR+RKk++++ Le k+ Le+e ++L Gorai.004G097700.1 107 AKKQKRQLRNRDAVVRSRERKKMYVKDLEMKSRYLEGECRRLS 149 59************************************98886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.0E-10	102	149	No hit	No description
PROSITE profile	PS50217	9.071	106	148	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.1E-9	107	149	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.88E-9	108	151	No hit	No description
CDD	cd14704	3.20E-13	109	154	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MEEINWDTFF LEVDLLDFGD ILDNEPEQVT KPPPQPCSTQ NPDEEPTLSS WIEEIEKVLI 60 EDDNFDHMVE TQLSPPCSGS DIVGVDSGDL HKQSQTHTDV DKDNPIAKKQ KRQLRNRDAV 120 VRSRERKKMY VKDLEMKSRY LEGECRRLSH VLHC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017606263.1	9e-85	PREDICTED: bZIP transcription factor 60-like
TrEMBL	A0A0D2MW25	1e-110	A0A0D2MW25_GOSRA; Uncharacterized protein
STRING	Gorai.004G097700.1	1e-111	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4634	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G42990.1	2e-09	basic region/leucine zipper motif 60

Link Out ? help Back to Top
Phytozome	Gorai.004G097700.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]