PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G118900.1

Common Name

B456_004G118900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 192aa MW: 21511.4 Da PI: 7.587

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G118900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.2	1.9e-13	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l++ v ++G +W++++ g+ R +k+c++rw +yl Gorai.004G118900.1 15 KGLWSPEEDLKLKNSVLKHGHFCWSSVPINAGLQRNGKSCRLRWINYL 62 678***************99**********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.693	10	66	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-20	10	65	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-9	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	5.7E-12	15	62	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.61E-19	17	92	IPR009057	Homeodomain-like
CDD	cd00167	2.93E-9	18	62	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-8	66	93	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MGCRPCEKPK AKHRKGLWSP EEDLKLKNSV LKHGHFCWSS VPINAGLQRN GKSCRLRWIN 60 YLRPGLKRGM FTPQEDDAIL SLHHLLGNKI AKVENVEAQH TSSTSESSVL PQNLTDQSAS 120 FATDQAVPMH FDLPQRSPLP KLLFAEWLSL DEEGGRFGTD LQDLLNDASV NQLFKFESQI 180 SGNDFIGSKW E*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017625709.1	1e-119	PREDICTED: transcription factor LAF1-like
TrEMBL	A0A0D2R362	1e-139	A0A0D2R362_GOSRA; Uncharacterized protein
STRING	Gorai.004G118900.1	1e-140	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48920.1	6e-40	myb domain protein 45

Link Out ? help Back to Top
Phytozome	Gorai.004G118900.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]