PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G123500.1
Common NameB456_004G123500, LOC105791228
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 233aa    MW: 26906.1 Da    PI: 6.5256
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G123500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.46.5e-203084256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        +++++f++eq++ Le+ Fe++ ++  +++ +LA++lgL+ rqV +WFqNrRa++k
  Gorai.004G123500.1 30 KQKRRFSDEQIRLLESIFESETKLEPRKKMQLARELGLQPRQVAIWFQNRRARWK 84
                        56789*************************************************9 PP
2HD-ZIP_I/II1261.7e-4031122293
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         +krr+s+eq++lLE+ Fe+e+kLep++K++lareLglqprqva+WFqnrRAR+k+kq+E+dy++Lk++yd+l+++ e+L+ke+++L  +++
  Gorai.004G123500.1  31 QKRRFSDEQIRLLESIFESETKLEPRKKMQLARELGLQPRQVAIWFQNRRARWKSKQIEQDYNTLKANYDNLESRFESLKKEKHSLILQIQ 121
                         79************************************************************************************98887 PP

         HD-ZIP_I/II  93 e 93 
                         +
  Gorai.004G123500.1 122 K 122
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.77E-202087IPR009057Homeodomain-like
PROSITE profilePS5007118.4792686IPR001356Homeobox domain
SMARTSM003892.2E-182890IPR001356Homeobox domain
PfamPF000462.8E-173084IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-203293IPR009057Homeodomain-like
CDDcd000861.24E-153387No hitNo description
PRINTSPR000314.3E-65766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000314.3E-66682IPR000047Helix-turn-helix motif
PfamPF021831.7E-1586127IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEREYHPAAD EAIAEQAPQT PKNKKKNKMK QKRRFSDEQI RLLESIFESE TKLEPRKKMQ  60
LARELGLQPR QVAIWFQNRR ARWKSKQIEQ DYNTLKANYD NLESRFESLK KEKHSLILQI  120
QKLSELLEEP HKGGKGLDGS STGGGGGSEY GETKCETEVE AQPSFQHKEC LGLQTENERG  180
DIKQTGQGGE EFLIMDEYKN DSPASPDKFY GLHSVDMFDH SYTNCQWLNF WT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17886RRARWKSKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474657.11e-174PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A0D2RY481e-172A0A0D2RY48_GOSRA; Uncharacterized protein
STRINGGorai.004G123500.11e-173(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1899938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.14e-45homeobox 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]