PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G134600.2
Common NameB456_004G134600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 352aa    MW: 39489 Da    PI: 5.2433
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G134600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.82.2e-23130186259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgy+WrKYGqK++ g+++pr  Yr t ++C+++k+v+rs+edp ++e+tY+g+H++ 
  Gorai.004G134600.2 130 DDGYSWRKYGQKDILGAKYPRCTYRNT-QNCWATKQVQRSDEDPILFEVTYRGTHTCA 186
                         8************************87.58**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-23123186IPR003657WRKY domain
SuperFamilySSF1182901.28E-20128186IPR003657WRKY domain
SMARTSM007744.8E-34129187IPR003657WRKY domain
PROSITE profilePS5081117.373130183IPR003657WRKY domain
PfamPF031069.4E-23130185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MENMWKWEQG TLVSELIQGM QLAKQLRLHL GAPSSSVESR DLLLQKILSS YEKALLILKL  60
SRPTEQPQQN VGGKTCVPES PLTINGSPRS DDLEKDNQDI RDVSKKRKMM PRWTDQVRVS  120
SENLLEGPHD DGYSWRKYGQ KDILGAKYPR CTYRNTQNCW ATKQVQRSDE DPILFEVTYR  180
GTHTCANGNP AVPSPEKQHK SNSNGLNNTN YQPLQSQDTL SEFRAGLRVN TEGLDNKEMA  240
PPFSFASTSF GCIKSENHSF SPSGVLDYYN IFGSFSSPFM SPDTPELNYF SVSQMNNFQG  300
VLNTQHSKSD LTELVSANTS ATNSPIMDLD FSLDQVELDP NFPFDTPGFF S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-15130185968OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0026350.0HM002635.1 Gossypium hirsutum WRKY transcription factor 41 (WRKY41) mRNA, complete cds.
GenBankKF0311010.0KF031101.1 Gossypium hirsutum WRKY transcription factor 64 (WRKY64) mRNA, complete cds.
GenBankKF6697750.0KF669775.1 Gossypium hirsutum WRKY transcription factor 27 (WRKY27) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474852.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A0D2PBD20.0A0A0D2PBD2_GOSRA; Uncharacterized protein
STRINGGorai.004G134600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.14e-71WRKY family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]