PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G134600.3

Common Name

B456_004G134600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 258aa MW: 29011 Da PI: 5.0751

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G134600.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	91.7	5.6e-29	32	92	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK++ g+++prsYYrCt++ +C+++k+v+rs+edp ++e+tY+g+H++ Gorai.004G134600.3 32 DDGYSWRKYGQKDILGAKYPRSYYRCTYRntqNCWATKQVQRSDEDPILFEVTYRGTHTCA 92 8*************************98899************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-28	25	92	IPR003657	WRKY domain
SuperFamily	SSF118290	3.01E-26	29	92	IPR003657	WRKY domain
SMART	SM00774	8.1E-41	31	93	IPR003657	WRKY domain
PROSITE profile	PS50811	21.861	32	89	IPR003657	WRKY domain
Pfam	PF03106	3.6E-27	32	91	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MIPGTVFCRK MMPRWTDQVR VSSENLLEGP HDDGYSWRKY GQKDILGAKY PRSYYRCTYR 60 NTQNCWATKQ VQRSDEDPIL FEVTYRGTHT CANGNPAVPS PEKQHKSNSN GLNNTNYQPL 120 QSQDTLSEFR AGLRVNTEGL DNKEMAPPFS FASTSFGCIK SENHSFSPSG VLDYYNIFGS 180 FSSPFMSPDT PELNYFSVSQ MNNFQGVLNT QHSKSDLTEL VSANTSATNS PIMDLDFSLD 240 QVELDPNFPF DTPGFFS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	7e-20	32	91	9	68	OsWRKY45
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM002635	0.0	HM002635.1 Gossypium hirsutum WRKY transcription factor 41 (WRKY41) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012474852.1	0.0	PREDICTED: probable WRKY transcription factor 41
TrEMBL	A0A0D2MXT5	0.0	A0A0D2MXT5_GOSRA; Uncharacterized protein
STRING	Gorai.004G134600.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11070.2	3e-59	WRKY family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G134600.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]