PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G139300.2
Common NameB456_004G139300, LOC105791407
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 674aa    MW: 75239.4 Da    PI: 6.4171
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G139300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.82.9e-064454673254
                         HHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  32 eLAkklgLterqVkvWFqNrRak 54 
                          LA+++gL+ +qV++WF N R +
  Gorai.004G139300.2 445 ILARQTGLSRSQVSNWFINARVR 467
                         59*******************88 PP
2BELL113.41.2e-36295363270
                BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiae 70 
                         ++elqk+k+kLls+leeVd+rY +y +q+++v+ssFeavag g+a +Y  lA+ka+SrhFrcL+d+i++
  Gorai.004G139300.2 295 FMELQKRKTKLLSMLEEVDRRYGHYSHQMKAVVSSFEAVAGSGAASVYSDLASKAMSRHFRCLRDRIVG 363
                         589****************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.5E-52232363IPR006563POX domain
PfamPF075263.7E-44238362IPR006563POX domain
PROSITE profilePS5007110.236411471IPR001356Homeobox domain
SuperFamilySSF466898.55E-12414478IPR009057Homeodomain-like
SMARTSM003898.1E-7414475IPR001356Homeobox domain
CDDcd000865.40E-9414472No hitNo description
Gene3DG3DSA:1.10.10.604.5E-21417477IPR009057Homeodomain-like
PfamPF059201.3E-10431467IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MVRELCEDKP RNIVSSTGFC YSDVSSGSSH PVSQIQGFES NPDPDIFNLA TGMEMIGFSK  60
NLPQQGDSYT AVWKGSLNKH GSNPDPSSNT INESKSDFYQ HEFNKPEFTA GISETETSTG  120
NLIVGAETGP WQENRLLVDD SSYRCVFPCE GNERPSQSLS LSLSSNNPST IGLQSFELRQ  180
TTSHSNHDQQ HDMRFIGSNS RDGFFEKAAN IQQQQQQAIQ SEFLEEAANL HHQGQFQVGS  240
SKFLVPTQEL LNEFCSLGTT QVDASKEKQI HKTKQCDDDN GASSSWKQPL YSLNFMELQK  300
RKTKLLSMLE EVDRRYGHYS HQMKAVVSSF EAVAGSGAAS VYSDLASKAM SRHFRCLRDR  360
IVGGIQATRK AMGEKDPVAP GTRRGETPRL KIIDKALRKQ RCFQQMNMME NQPWRPKRGL  420
PERSVSVLRA WLFEHFLHPD VDKHILARQT GLSRSQVSNW FINARVRLWK PMVEEIYMEE  480
TKEHENNMAS SDAVTTIDGD DNIGRPNPNI LLTDQKPTPD QLVRIDSECL SSIVSNDPEK  540
NDAKSAKTLQ NQHLHQHHYQ KQSFETSGIM ELDFSSYSHH HTSGGASYNG SDYNANQSCF  600
NGGGSVSLTL GLQQHGGTGV SLAFSPAAQS SIFYPRDHIE DCQPVQYSLL DGEAQHLPYR  660
SLIGAQLLHD FTG*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}.
UniprotTISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474927.10.0PREDICTED: homeobox protein BEL1 homolog isoform X2
SwissprotQ388971e-134BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A0D2RZ500.0A0A0D2RZ50_GOSRA; Uncharacterized protein
STRINGGorai.004G139300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-118TALE family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]