PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G144900.1
Common NameB456_004G144900, LOC105791466
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 289aa    MW: 32483.2 Da    PI: 7.9303
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G144900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.14.2e-34151208259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s fprsYYrCt+++C+vkk+vers +dp++v++tYeg+H+h+
  Gorai.004G144900.1 151 EDGYRWRKYGQKAVKNSSFPRSYYRCTTTSCNVKKRVERSFTDPSMVITTYEGQHTHP 208
                         8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381306.3E-971288IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.801.2E-34136210IPR003657WRKY domain
SuperFamilySSF1182901.7E-29142210IPR003657WRKY domain
PROSITE profilePS5081130.871145210IPR003657WRKY domain
SMARTSM007742.9E-40150209IPR003657WRKY domain
PfamPF031066.8E-27151208IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MESKEGVLKM EEELGNSFSD YFPLQSIFDW SCEGGGNMPL GFMELLGVQD LKPPLFDMGQ  60
QQAPSAVVNQ ALNPCSTKNE RFNYQPATPN SSSISSASSE AVNDEPIQVD DDQEEDQQKT  120
KKQLKPKKTN QKRQSEPRFA FMTKSEVDHL EDGYRWRKYG QKAVKNSSFP RSYYRCTTTS  180
CNVKKRVERS FTDPSMVITT YEGQHTHPSP IKPRSSLGGG AGSAPYHYRQ QRQPFVNTLP  240
PLNFGHNNGS IKAGNFHHER RFCSPGSSLL KDHGLLQDVI PSHMLKEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-27140210777Probable WRKY transcription factor 4
2lex_A4e-27140210777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384680.0KM438468.1 Gossypium aridum WRKY65 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474991.10.0PREDICTED: probable WRKY transcription factor 23 isoform X2
SwissprotO229007e-61WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A0D2PBY00.0A0A0D2PBY0_GOSRA; WRKY transcription factor
STRINGGorai.004G144900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61522647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.12e-52WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  5. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]