PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G152400.1

Common Name

B456_004G152400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 99aa MW: 11198.9 Da PI: 10.3868

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G152400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21	5.8e-07	70	95	6	30
HHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 6 nerErrRRdriNsafeeLrellPk.a 30 ++Er RR +i +++ +L+el+P+ + Gorai.004G152400.1 70 RIAERVRRTQISDRIRKLQELVPNmD 95 579********************955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.388	64	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-6	67	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-5	69	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
MDVSPSIKRA SELDTQFPLT KFHSQLKGEP SDQISGGISN LIDVDMEKLL EDSVPCRVRT 60 KRGCATHPRR IAERVRRTQI SDRIRKLQEL VPNMDKAR*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.
Uniprot	TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012475095.1	1e-65	PREDICTED: transcription factor bHLH80-like, partial
Swissprot	Q9C8P8	3e-36	BH080_ARATH; Transcription factor bHLH80
Swissprot	Q9M0R0	3e-36	BH081_ARATH; Transcription factor bHLH81
TrEMBL	A0A0D2R573	5e-65	A0A0D2R573_GOSRA; Uncharacterized protein
STRING	Gorai.004G152400.1	8e-66	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5104	25	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35460.1	1e-38	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G152400.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]