PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G155100.1

Common Name

B456_004G155100, LOC105793653

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 199aa MW: 22403.4 Da PI: 9.1427

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G155100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.4	1.3e-32	119	177	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+v+r ++d ++v++tYeg Hnh+ Gorai.004G155100.1 119 LDDGYRWRKYGQKAVKNSNYPRSYYRCTHHTCNVKKQVQRLSKDSSIVVTTYEGVHNHP 177 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-33	105	177	IPR003657	WRKY domain
SuperFamily	SSF118290	1.09E-28	112	178	IPR003657	WRKY domain
PROSITE profile	PS50811	29.034	114	179	IPR003657	WRKY domain
SMART	SM00774	2.0E-38	119	178	IPR003657	WRKY domain
Pfam	PF03106	2.8E-26	120	177	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MDGQELISTP PPAAPPPLTA PFFFAPSTTP SSSLHPLPPL ESQIIPDIDW VSLLYGQALL 60 LQGHDESKPV TETASSLMAE NGGCHQIENG NQDKRKGNRF KKTTRPRFAF QTRSADDILD 120 DGYRWRKYGQ KAVKNSNYPR SYYRCTHHTC NVKKQVQRLS KDSSIVVTTY EGVHNHPCEK 180 LMETLTPLLK QMQFLSRF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-24	109	176	7	74	Probable WRKY transcription factor 4
2lex_A	1e-24	109	176	7	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF031103	0.0	KF031103.1 Gossypium hirsutum WRKY transcription factor 66 (WRKY66) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012477968.1	1e-149	PREDICTED: probable WRKY transcription factor 43
Swissprot	Q8GY11	1e-54	WRK43_ARATH; Probable WRKY transcription factor 43
Swissprot	Q8VWQ4	1e-53	WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBL	A0A0D2MYS8	1e-148	A0A0D2MYS8_GOSRA; Uncharacterized protein
STRING	Gorai.004G155100.1	1e-148	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM509	28	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46130.1	6e-57	WRKY DNA-binding protein 43

Link Out ? help Back to Top
Phytozome	Gorai.004G155100.1
Entrez Gene	105793653

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Geilen K,Heilmann M,Hillmer S,Böhmer M WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions. Sci Rep, 2017. 7(1): p. 14235 [PMID:29079824]