PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G155100.2
Common NameB456_004G155100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 164aa    MW: 18398.8 Da    PI: 9.0672
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G155100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY37.26e-12119141123
                         ---SS-EEEEEEE--TT-SS-EE CS
                WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                         ldDgy+WrKYGqK vk+s++pr 
  Gorai.004G155100.2 119 LDDGYRWRKYGQKAVKNSNYPRF 141
                         59*******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-13105144IPR003657WRKY domain
SuperFamilySSF1182908.76E-10112141IPR003657WRKY domain
PROSITE profilePS5081114.412114152IPR003657WRKY domain
SMARTSM007749.2E-7119163IPR003657WRKY domain
PfamPF031062.4E-8120148IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MDGQELISTP PPAAPPPLTA PFFFAPSTTP SSSLHPLPPL ESQIIPDIDW VSLLYGQALL  60
LQGHDESKPV TETASSLMAE NGGCHQIENG NQDKRKGNRF KKTTRPRFAF QTRSADDILD  120
DGYRWRKYGQ KAVKNSNYPR FVTRHAYTSK ICMEYINNFF KHT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0311030.0KF031103.1 Gossypium hirsutum WRKY transcription factor 66 (WRKY66) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477968.11e-101PREDICTED: probable WRKY transcription factor 43
TrEMBLA0A0D2R5C21e-120A0A0D2R5C2_GOSRA; Uncharacterized protein
STRINGGorai.004G155100.11e-101(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.14e-17WRKY DNA-binding protein 43
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]